Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq17868 145 7e-30 >seq17868 Length=20976 Score = 145 bits (160), Expect = 7e-30 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| || ||||| || || ||||| |||||| | ||||| |||||| Sbjct 6185 CACAAGGTGGAGAGTTGACTCCTTCTGGATGTTATAATCGGAGAGGGTGCGACCATCCTC 6126 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| ||||| ||| ||||||| | |||||||| ||||| || || |||||||| Sbjct 6125 GAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTG 6066 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || ||||| | ||||| |||||| | | ||| ||||||| ||| | |||||| Sbjct 6065 GATCTTGGCCTTAACATTTTCGATGGTGTCGGAGGCCTCAACCTCGAGGGTGATCGTTTT 6006 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| |||||| || ||||| ||||| Sbjct 6005 TCCGGTCAAAGTTTTGACGAAAATTTGCAT 5976 Score = 125 bits (138), Expect = 6e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||| | || || |||||||| |||||||| ||| | || || |||||| Sbjct 8332 CACAAGGTGAAGAGTGGATTCTTTTTGGATGTTGTAGTCGGAGAGGGTACGGCCATCCTC 8273 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| ||||||||| |||| | |||||||||||| || || || |||||||||||| Sbjct 8272 GAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTG 8213 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTT 118707 || || || || | ||||| |||||| | |||| |||||||| | ||| | |||| Sbjct 8212 GATCTTGGCCTTGACGTTTTCGATGGTGTCGGATGCT-TCGACCTCAAGGGTGATAGTTT 8154 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | || || | ||| || || || || ||||| Sbjct 8153 TTCCAGTTAAAGTCTTGACGAAGATTTGCAT 8123 Score = 118 bits (130), Expect = 9e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| || ||||| || || |||||||| ||| | |||||| ||||| Sbjct 7601 CACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCGTCCTC 7542 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||||||||| ||| |||| || | |||||||| || || || || |||||||| Sbjct 7541 GAGCTGTTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTG 7482 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | ||||| |||||| | | |||||||| | || | || || Sbjct 7481 GATCTTGGCCTTGACATTTTCGATGGTGTCGGAGGCTTCGACCTCAAGCGTGATGGTCTT 7422 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| ||| || |||||||| ||||| Sbjct 7421 TCCGGTCAAAGTCTTCACAAAAATTTGCAT 7392 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| ||| ||||| |||||||||||||| || || ||||| ||| || | || Sbjct 7090 TGGAGTGTCGACTCCTTTTGAATGTTGTAGTCCGACAGGGTGCGACCATCTTCCAATTGC 7031 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 ||||| ||| |||| || | || || || || || || ||||| |||||| ||||| Sbjct 7030 TTTCCGGCGAAGATCAGTCTTTGTTGGTCTGGTGGGATTCCCTCTTTGTCTTGGATTTTG 6971 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 ||| || | ||||| ||||| | | ||||||||| | || | || || |||||| Sbjct 6970 GCTTTGACATTTTCGATAGTGTCGGAGGCCTCGACCTCAAGCGTGATGGTCTTTCCGGTC 6911 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 | ||| || ||||| || ||||| Sbjct 6910 AAAGTCTTGACAAAGATTTGCAT 6888 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||| | ||||| ||| ||||| || || |||||||| ||| | ||||| ||||| Sbjct 6413 CACGAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTC 6354 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || ||| |||| || ||||||||||| || || || || || ||||| Sbjct 6353 GAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGATCTGGTGGAATTCCTTCTTTGTCCTG 6294 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | ||| | |||||| | | ||| ||||||| ||| | || || Sbjct 6293 GATCTTGGCCTTGACATTTTCAATGGTGTCGGAGGCCTCAACCTCGAGGGTGATGGTCTT 6234 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || || || |||||||| Sbjct 6233 TCCTGTGAGGGTCTTCACGAAGATCTGCAT 6204 Score = 102 bits (112), Expect = 7e-17 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 118535 GTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTG 118594 ||||| ||| ||||| || || |||||||| || | ||||| |||||| ||||| Sbjct 7823 GTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGGCCATCCTCAAGCTG 7764 Query 118595 TTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTT 118654 |||||| ||| | || || | |||||| || || || || |||||||||||| || || Sbjct 7763 TTTTCCGGCGAAAATAAGTCTCTGCTGGTCTGGCGGGATACCCTCCTTGTCTTGGATCTT 7704 Query 118655 TTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGT 118714 || || | ||||| ||||| | | ||||| || | ||| | || || ||||| Sbjct 7703 GGCCTTCACATTTTCGATTGTGTCGGAGGCTTCGACTTCAAGGGTGATGGTCTTTCCGGT 7644 Query 118715 CAGAGTTTTTACAAAAATCTGCAT 118738 || || || || || |||||||| Sbjct 7643 GAGGGTCTTCACGAAGATCTGCAT 7620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433730908725364