Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq18085 250 2e-61 seq17418 114 1e-20 seq17868 104 2e-17 >seq18085 Length=168442 Score = 250 bits (276), Expect = 2e-61 Identities = 419/601 (70%), Gaps = 4/601 (1%) Strand=Plus/Plus Query 23336 TCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGG 23395 || ||||| || ||| |||| || | ||| || | ||| || || ||||| || || Sbjct 29911 TCCTTTTCGACACGTTTCATGAACAAATCTGGCACCCAGAGTGCCAGAAACAGATCACGA 29970 Query 23396 GCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAA-AAAGTCCAACACGTCCGC 23454 || ||| |||| || || ||||| ||| | | || ||| || || | || || Sbjct 29971 GCACGCTCCTCTTCGGGTCCAGTGTT-TTTGCGGAGTGAAACAAACTCGAAAATATCGGC 30029 Query 23455 ATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGAC 23514 ||||||||||| ||||| | ||| ||||| ||||| | ||| ||||| ||||||||||| Sbjct 30030 GTGCCACGGCTCCAGGTAGATGGCGAACGCTCCCGGGCGCTTGTTGCCACCCTGATCGAC 30089 Query 23515 GTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCC 23574 |||||| || ||||||||||| || | |||||||| | || ||||| |||| ||| Sbjct 30090 GTAACGAGCAGTGTTGTTGTAGACGCGAAGCATCGGAATCAGTCCGTTCGACGTTCCGTT 30149 Query 23575 TACGCCCGCCA-CACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTC 23633 ||| || | ||| ||| || | || |||| ||||| |||| || ||| || || | Sbjct 30150 GGTGCCAGCAATCAC-CGATCCGGTGGCACGAATCTTGTGCACGTTGAGACCGATTCCAC 30208 Query 23634 CGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGT 23693 | | |||||||| | ||||||||||| || ||||| ||||| ||| || || Sbjct 30209 CTGCGCTCTTCGATATAAGGGCGCATTGTTTTAGCGTGTCATAGATTCCCAGAATCGAGT 30268 Query 23694 CCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGA 23753 | || | ||| || || ||| ||||| |||||||| | | || | | || Sbjct 30269 CATCACTCATCGTGAGCAGGAAGCACGACGACATTTGTGGCCGGCATGTTCCAGAGTTGA 30328 Query 23754 ACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGG 23813 | || || || ||||||||| | | | | | |||||| | ||||||||| ||||||| Sbjct 30329 AAAGAGTTGGAGAGGCGTGCGTCATGAACCGTTCCGACATCAAATTGTACGTTTCGATGG 30388 Query 23814 CGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTC 23873 | | | | || || ||||||||||| ||||||||||| ||||||| ||| | ||||| | Sbjct 30389 CTGAAGCGATATCTTCTCCGTGTATTCCGATGGCGACACGCATCAACATCTGCTGAGGAC 30448 Query 23874 TCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAA 23933 ||||| | | ||| || |||| || || ||||| | | |||||| || || | Sbjct 30449 GTTCGACAATCTCCTTGTTTATCTTGAGAAGGTAGGAACGCTCAAGCGTTTTGAAGCCGA 30508 Query 23934 A 23934 | Sbjct 30509 A 30509 Score = 149 bits (164), Expect = 6e-31 Identities = 325/480 (68%), Gaps = 9/480 (2%) Strand=Plus/Plus Query 22096 AGCGGCGGTCTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATA 22155 |||| || | ||||| || || ||||| | ||||| ||||||| || ||||| | ||| Sbjct 27150 AGCGCCGCT-TTGTCGACAGTGAACTGAACAGCGTTGACGGCCGGCTTCGTGCGCAAATA 27208 Query 22156 ATACATGCCCGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCC 22215 ||||| |||||||| || ||| ||||||| ||||||| || ||||| || | | | Sbjct 27209 GTACATTCCCGTCTTGAGTCCCTTCTTCCATCCGTAAAAGTGCATCGAGGTGATGGTGGC 27268 Query 22216 ATAACTCGGCAAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCG 22275 || || ||| | |||| | | || |||||||| ||||| || | ||||| || Sbjct 27269 GTAGCTAGGCTTGGCCATATGAATGTTCAACGACTGCGATTGATCAATGTAGGCTCCACG 27328 Query 22276 ATCGGCGGCCATATTTATCAATGTACGCATC-GACATTTCCCATACGGTCTTGTACAGTT 22334 || || ||||| | || ||| | | | | || ||||| || || |||||| | Sbjct 27329 GTCCGCCGCCATCTCGAT-AATCTCCTTTTGTGGAATCTCCCACACAGTGCGGTACAGCT 27387 Query 22335 GCCTGATCTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCA 22394 | || || ||| || || || | || ||| ||||| ||| | | |||| Sbjct 27388 CCTGGAGATCGGTCGGAATTCCCTCAATGTCTTTGATGGATCCGTTGTTG-GCA--ATCA 27444 Query 22395 AA---TTTTTAATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGAC 22451 | || || ||| |||||||||||| || | ||| || |||| || || Sbjct 27445 GACGGTTCTTCATCTCATCGTTCCACAATCCACGCTCCACCAAGTCCTTGAGCATGTGTG 27504 Query 22452 GGTTCACCACTTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACG 22511 |||| || | || || || ||||| | || || || ||| ||||| || ||| ||| Sbjct 27505 GGTTGACAATCTGGAAGTCACCGGAGAGCACACGACGAGAGTAGATGTTTGAGGTGTACG 27564 Query 22512 GTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCA 22571 | |||| || ||||||||||| |||||||| || || ||||| |||||||| || |||| Sbjct 27565 GCTCGATCGACTCATTGTTTCCGAGTATCTGGGCAGTGGAAGCCGTCGGCATTGGAGCCA 27624 >seq17418 Length=39954 Score = 114 bits (126), Expect = 1e-20 Identities = 615/994 (62%), Gaps = 124/994 (12%) Strand=Plus/Minus Query 57505 CCGATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAAT-AT 57563 ||||||||||||| | || || | | | | ||||| || || ||| ||||| || Sbjct 1358 CCGATGAACCACTCCTTCAGGATCTTGACAATCGCTTTGTGATTTTCCCG-TTGAAGCAT 1300 Query 57564 CCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTA 57623 | | || ||| | | ||||||||||||| ||| || || ||||| ||||| ||||| Sbjct 1299 CACCAAATCTGGGAATTCTACAAAAAGGCAGTAGCGTCATTCTGGACGGTCGAGGAAGTC 1240 Query 57624 GACCTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATT 57683 || ||| || ||| ||| |||||||| | || | |||| | | ||||| Sbjct 1239 GATCTGGGCAAAGATATGAATGATTGGGAGAAGATGAATGGTGATGAGCAATACTTTATC 1180 Query 57684 AAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGT---- 57739 || || | || |||||||| || |||||||| || || || ||||||||||| Sbjct 1179 TCACGAGTTCTCGCCTTTTTCGCTGCTTCCGATGGAATCGTCAATGAGAATTTGGTAAAT 1120 Query 57740 -CGA---AAGATTTTCA----------------------------------CAAGAAGTG 57761 ||| || ||||||| | |||||| Sbjct 1119 ACGACTTAAAATTTTCAGTTTAAAAGTATTGTTCAGTGTGAGCGCTTCTCGAACGAAGTG 1060 Query 57762 CAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCA 57821 |||| | ||||| ||| ||| || ||||| ||| | ||||| || || | || || Sbjct 1059 AAAGTATCAGAGGCCCGATTCTTCTATGGATTCCAAATCGCCATCGAGAATATTCACTCG 1000 Query 57822 GAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTG 57881 |||||||| ||| |||||||| |||||| | ||| | ||| | | |||| Sbjct 999 GAAATGTACTCGAAGCTCATCGAGACGTACATTCGAGACGAAACAGAGCGTCACACACTG 940 Query 57882 TTCAACGCGA---TCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAA 57938 | ||||| | |||| | | ||| |||||||| || ||| | || Sbjct 939 CTTAACGCAATTTTCGAGTTTGAGTTC---ATCAAGAAGAAGGCCGACTGGGCTCTCCGT 883 Query 57939 TGGAT--------AAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCG 57990 ||||| | |||||| || || |||||||| || ||||||||||| | Sbjct 882 TGGATTTCGGACAAGAAAGCGTCA--------TTTGCCGAGAGACTTATCGCGTTCGCTG 831 Query 57991 CCGTCGAAGGTATATTCTTTTCGGGCAGCTTT-GCGGCAATATTTTGGATGAAGAAACGC 58049 | |||||||| || || |||| | | | |||| || | || |||||| | || || || Sbjct 830 CTGTCGAAGGAATCTT-TTTTAGTGGATCTTTCGCCTCCATTTTTTGGCTTAAAAAGCGT 772 Query 58050 GGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATC------------------- 58090 || || ||||| || || || | ||||| |||| || Sbjct 771 GGGCTCATGCCAGGGCTCACTCATTCTAACGAACTGATTTCTAGGTAAATATTTGTTTTT 712 Query 58091 -----------------GC--------GCGACGAGGGTCTCCATACTGATTTTGCGTGCC 58125 || | ||||| || || ||| ||| ||||| |||| Sbjct 711 CGTTTGACCACAATCCAGCATTTTCCAGAGACGAAGGACTTCATCGTGACTTTGCATGCC 652 Query 58126 TAATGTACTCTCACATTGTC---AATAAACCGACGCGGGATCGCATCTTGGACATTATCA 58182 | | || || || || || || | || | ||| || |||| || ||||||| Sbjct 651 TCCTCTATTC---GATGCTCCAAAAAAAGCTCACCCAGGAACGAATCTACGAGATTATCA 595 Query 58183 CCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCG 58242 || || ||| ||||||| | || || | |||||||| || || || | |||| | | Sbjct 594 GTGACGCAGTCAAGATCGAACAGGAATTCCTTACCGAAGCGCTGCCAGTCGACATGATTG 535 Query 58243 GTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCG 58302 | |||||| | | | ||||| |||||||||||||||| ||||| || | | | Sbjct 534 GAATGAACTGTCGTCTCATGTCCCAGTACATTGAGTTTGTCGCCGATCATCTGCTTGTTG 475 Query 58303 AACT--GAT-TGGAGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGA 58359 |||| ||| || | || | ||||| | |||||||||||| || || ||| | | Sbjct 474 AACTCGGATGTGAAAAG---CTGTACAAGAAGAAAAATCCGTTCGACTTCATGGAGAATA 418 Query 58360 TCTCGCTCGAGGGCAAGACAAACTTTTTCGAAAA 58393 ||||| | || || ||||||||||||||||| || Sbjct 417 TCTCGATTGATGGAAAGACAAACTTTTTCGAGAA 384 >seq17868 Length=20976 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || ||| |||| || |||||||||||| |||| ||||| | ||| Sbjct 5976 ATGCAAATTTTCGTCAAAACTTTGACCGGAAAAACGATCACCCTCGAGGTTGAGGCCTCC 6035 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| || || | || |||||||||||| | || || || ||| Sbjct 6036 GACACCATCGAAAATGTTAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCAGATCAG 6095 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || ||||| || || ||| | || || | || | |||||||||| Sbjct 6096 CAAAGACTCATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACCCTCTCCGATTATAAC 6155 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || ||||| || || || || Sbjct 6156 ATCCAGAAGGAGTCAACTCTCCACCTTGTGCT 6187 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| ||||| |||||| | || || ||||| |||||| | || || ||| | ||| Sbjct 8123 ATGCAAATCTTCGTCAAGACTTTAACTGGAAAAACTATCACCCTTGAGGTCGAAGCATCC 8182 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| ||||| | || |||||||| || | || || || ||| Sbjct 8183 GACACCATCGAAAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAG 8242 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||| | || |||||||| || ||| | || || || | ||| || ||| Sbjct 8243 CAGCGTTTGATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGTACCCTCTCCGACTACAAC 8302 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || ||||||||||| |||||||| || || || Sbjct 8303 ATCCAAAAAGAATCCACTCTTCACCTTGTGCT 8334 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| || || || || || ||||| | || ||||| | || Sbjct 6660 ATGCAAATTTTCGTGAAGACCCTCACTGGAAAGACTATCACTTTGGAAGTTGAGGCATCA 6719 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||||| ||||| | || |||||||||||| | || || |||||| Sbjct 6720 GACACTATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGACCAG 6779 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||| || || ||| | || || | || | || |||||| Sbjct 6780 CAGAGACTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACCCTCTCGGACTATAAC 6839 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || ||||| || ||||| ||||| || || Sbjct 6840 ATCCAGAAAGAGTCAACTCTCCATCTTGTGCT 6871 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || |||||| |||| || || || ||||| | || || || | ||| Sbjct 6888 ATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATCACGCTTGAGGTCGAGGCCTCC 6947 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | |||||| |||||| | ||| ||||| || || | || || ||||| Sbjct 6948 GACACTATCGAAAATGTCAAAGCCAAAATCCAAGACAAAGAGGGAATCCCACCAGACCAA 7007 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || ||||| || || || |||||||| | || || || || ||| Sbjct 7008 CAAAGACTGATCTTCGCCGGAAAGCAATTGGAAGATGGTCGCACCCTGTCGGACTACAAC 7067 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||| || ||||| || ||||| || || Sbjct 7068 ATTCAAAAGGAGTCGACACTCCATCTCGTTCT 7099 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||| |||| || || || ||||| | || || ||| | ||| Sbjct 7392 ATGCAAATTTTTGTGAAGACTTTGACCGGAAAGACCATCACGCTTGAGGTCGAAGCCTCC 7451 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||||| ||||| | || |||||||||||| | || || || ||| Sbjct 7452 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGATCAG 7511 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || ||||| || |||||| | || ||| | ||| | ||| || ||| Sbjct 7512 CAAAGACTGATCTTCGCCGGAAAACAGCTCGAGGACGGTCGCACTCTCTCCGACTACAAC 7571 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || || || ||||| || || || || Sbjct 7572 ATCCAGAAGGAGTCAACTCTCCACCTTGTGCT 7603 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| |||||| |||| || || |||||||| | || || ||| | ||| Sbjct 6432 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACGATCACATTGGAAGTCGAAGCCTCC 6491 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||| | ||| ||||||||||| | || || |||||| Sbjct 6492 GACACAATTGAGAACGTGAAAGCAAAAATTCAAGACAAGGAAGGAATCCCACCAGACCAG 6551 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATAA 31371 || | || || || || || || ||| ||||||| | | | || || ||| || || Sbjct 6552 CAAAGACTGATCTTTGCCGGAAAGCAGCTGGAAGA-TGGACGCACATTGTCCGACTACAA 6610 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||| ||||| || ||||| |||| || Sbjct 6611 TATTCAAAAGGAATCCACACTTCACTTGGTTCT 6643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445661550170640