Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq17432 96.9 7e-15 seq17418 93.3 8e-14 >seq17432 Length=65892 Score = 96.9 bits (106), Expect = 7e-15 Identities = 207/307 (67%), Gaps = 2/307 (1%) Strand=Plus/Minus Query 35360 TTTTTGGACAGTAGAGGGTTATACGATAGAGCAGAGGGAGATTTGGGACCCGTATACGGA 35419 ||| |||||| | ||||| || | | | |||||| ||| | || || || |||||| Sbjct 6187 TTTCTGGACAATCTCGGGTTCACCGCTCGTGAAGAGGGTGATCTCGGCCCGGTTTACGGA 6128 Query 35420 TTCCAATGGCGTCATTTTGGTGCTGAATATGATACCTGTTCTTCCGATTATACTGGAAAG 35479 || || ||| | ||||| ||||| |||| | ||| |||| || || || || Sbjct 6127 TTTCAGTGGAGACATTTCGGTGCGAAATACGTGGATTGTCACACCGACTACACCGGTCAG 6068 Query 35480 GGTATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGG 35539 ||| | ||||| |||||| | || | | | | || |||| || | || | Sbjct 6067 GGTGTCGATCAGTTGGCCGAGGTAATCCGGCAAATCAAGGAGGATCCGGACAGTCGACGC 6008 Query 35540 ATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATGGCTCTTCCTCCATGCCAC 35599 || ||| || | || |||||| | |||||||| | |||| | || || |||||| Sbjct 6007 ATTATTTTGTCTGCGTGGAATGCGGCGGATCTTCGGCAAATGGTGTTGCCACCGTGCCAC 5948 Query 35600 ATGAC-TGCTCAATTTTATGTGGCTAATGGAGAATTGTCGTGCCAGTTGTATCAGCGAAG 35658 | || ||| || ||||| || | |||||||| | ||||| |||||||||||||| || Sbjct 5947 ACGATGTGC-CAGTTTTACGTCGAGGATGGAGAACTTTCGTGTCAGTTGTATCAGCGCAG 5889 Query 35659 CGGAGAT 35665 |||||| Sbjct 5888 TGGAGAT 5882 >seq17418 Length=39954 Score = 93.3 bits (102), Expect = 8e-14 Identities = 232/352 (66%), Gaps = 19/352 (5%) Strand=Plus/Minus Query 102027 TTTCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTG 102086 |||| || |||||||| |||||||| |||||||||||| | || | || | Sbjct 690 TTTCCAGAGACGAAGGACTTCATCGTGACTTTGCATGCCTCCTCTA----------TTCG 641 Query 102087 TTGATACCCCATCAAG-------AGAAAGGATTCTT-GAAATTGTCACTGAAGCCGTCCG 102138 || | || | ||| || || || ||| || ||| ||| ||| || ||| Sbjct 640 ATGCT-CCAAAAAAAGCTCACCCAGGAACGAATCTACGAGATTATCAGTGACGCAGTCAA 582 Query 102139 AATTGAACAAGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAA 102198 || ||||| ||||| || || | | ||||| || | | | ||||||||||| Sbjct 581 GATCGAACAGGAATTCCTTACCGAAGCGCTGCCAGTCGACATGATTGGAATGAACTGTCG 522 Query 102199 GTTGATGAGCCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGA 102258 | ||| |||||||||||| ||||| || ||| | || | |||||| | ||| || Sbjct 521 TCTCATGTCCCAGTACATTGAGTTTGTCGCCGATCATCTGCTTGTTGAACTCGGATGTGA 462 Query 102259 AAAGCACTATAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAA 102318 ||||| || || | || || ||| |||||||| ||||| || | || || Sbjct 461 AAAGCTGTACAAGAAGAAAAATCCGTTCGACTTCATGGAGAATATCTCGATTGATGGAAA 402 Query 102319 GACCAACTTTTTTGAAAAGAGAGTCGCCGAGTATCAACGTGCCCAGGTCATG 102370 ||| |||||||| || ||| | || | |||||||| ||| || |||||| Sbjct 401 GACAAACTTTTTCGAGAAGCGCGTTTCGGAGTATCAGCGTCCCGGAGTCATG 350 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989345418410235