Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq18085 214 2e-50 seq17418 131 2e-25 >seq18085 Length=168442 Score = 214 bits (236), Expect = 2e-50 Identities = 485/724 (67%), Gaps = 14/724 (2%) Strand=Plus/Plus Query 63188 TTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGA 63247 ||||||||| |||||||| || || | | || || || ||| |||||||| || Sbjct 29841 TTCGAACTCTTCTCCCCAGCAATCATCAAGCCCTGGGCACTCGCACGGGCACATCAAAGA 29900 Query 63248 CCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 63304 ||| || | |||||| || |||||||| || | ||| || | ||| || || | Sbjct 29901 CCAATCC---TGATCCTTTTCGACACGTTTCATGAACAAATCTGGCACCCAGAGTGCCAG 29957 Query 63305 AAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 63364 ||| ||||| | | | | || ||| ||| || || || || | ||| | Sbjct 29958 AAACAGATCACGAGCACGCTCCTCTTCGGGTCCAGTGTTTTTGCGGAGTGAAACAAACTC 30017 Query 63365 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63424 | |||||| | |||||||| |||| ||| ||||| | |||| || || ||||| || Sbjct 30018 GAAAATATCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGCTCCCGGGCGCTTGTTGCC 30077 Query 63425 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTT 63484 |||||||| | ||| | ||| ||||| || || || | | ||| ||||| | ||||| Sbjct 30078 ACCCTGATCGACGTAACGAGCAGTGTTGTTGTAGACGCGAAGCATCGGAATCAGTCCGTT 30137 Query 63485 TGATATACCATTGGTACCGGAGATATAGCC--TCCACTGGCACGAATATTACTAA--TTG 63540 || | || ||||| || || || || ||| |||||||||| || | ||| Sbjct 30138 CGACGTTCCGTTGGTGCC--AGCAATCACCGATCCGGTGGCACGAATCTTGTGCACGTTG 30195 Query 63541 ATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGA 63600 | |||| ||||| ||||| | || || || | |||||| |||||| ||||||||||| Sbjct 30196 A--GACCGATTCCACCTGCGCTCTTCGATATAAGGGCGCATTGTTTTAGCGTGTCATAGA 30253 Query 63601 TGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAG 63660 | || || ||||| |||| | || || || || |||||||| | || Sbjct 30254 TTCCCAGAATCGAGTCATCACTCATCGTGAGCAGGAAGCACGACGACATTTGTGGCCGGC 30313 Query 63661 TAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGAT 63720 ||||| | || || | || ||||| |||||||| | | ||| || | | || Sbjct 30314 ATGTTCCAGAGTTGAAAAGAGTTGGAGAGGCGTGCGTCATGAACCGTTCCGACATCAAAT 30373 Query 63721 TGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTA 63780 ||||||| || || ||||| | ||||| | || ||||| | ||||||||||| | Sbjct 30374 TGTACGTTTCGATGGCTGAAGCGATATCTTCTCCGTGTATTCCGATGGCGACACGCATCA 30433 Query 63781 ACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCA 63840 |||| |||||||| | ||| ||||| | |||||||| || | | |||||| || | Sbjct 30434 ACATCTGCTGAGGACGTTCGACAATCTCCTTGTTTATCTTGAGAAGGTAGGAACGCTCAA 30493 Query 63841 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGA 63900 ||||| || || || || |||| || |||| || ||||| | ||| | || |||| Sbjct 30494 GCGTTTTGAAGCCGAAGAAGGTGTACGAGTAGTCGCGGTCGTAGACAATCGCTGAGTTGA 30553 Query 63901 GCTT 63904 | || Sbjct 30554 GTTT 30557 Score = 118 bits (130), Expect = 1e-21 Identities = 294/441 (67%), Gaps = 13/441 (3%) Strand=Plus/Plus Query 62067 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62126 || || ||||| || | ||||||||||||||| || || || ||||||||||||| Sbjct 27189 GCCGGCTTCGTGCGCAAATAGTACATTCCCGTCTTGAGTCCCTTCTTCCATCCGTAAAAG 27248 Query 62127 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62186 ||||| || | ||| || || || | || ||||| || |||| || || | Sbjct 27249 TGCATCGAGGTGATGGTGGCGTAGCTAGGCTTGGCCATATGAATGTTCAACGACTGCGAT 27308 Query 62187 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGCAATTTCC 62246 ||||| ||| ||||||| | ||| || ||||| | || ||| |||||||| ||| ||| Sbjct 27309 TGATCAATGTAGGCTCCACGGTCCGCCGCCATCTCGATAATCTCCTTTTGTGGAATCTCC 27368 Query 62247 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTT-------TGTATTCTGAA 62298 || | ||| || | ||| || | ||| |||| || ||| || || | Sbjct 27369 CACACAGTGCGGTACAGCTC-CTGGAGATCGGTCGGAA--TTCCCTCAATGTCTT-TG-A 27423 Query 62299 TGGATCCACCATCTACCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGG 62358 ||||||| | | || | | ||||| |||||||| ||||| ||| | ||| Sbjct 27424 TGGATCCGTTGTTGGCAATCAGACGGTTCTTCATCTCATCGTTCCACAATCCACGCTCCA 27483 Query 62359 TTAAAACTCTAAGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAG 62418 || | | || | || ||||| || | ||||| || || || | || | |||| Sbjct 27484 CCAAGTCCTTGAGCATGTGTGGGTTGACAATCTGGAAGTCACCGGAGAGCACACGACGAG 27543 Query 62419 TGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTG 62478 ||| || || ||| ||||| || | ||||||||| ||||| | || || ||||| | Sbjct 27544 AGTAGATGTTTGAGGTGTACGGCTCGATCGACTCATTGTTTCCGAGTATCTGGGCAGTGG 27603 Query 62479 ATGCAGTCGGCATAGGTGCCA 62499 | || |||||||| || |||| Sbjct 27604 AAGCCGTCGGCATTGGAGCCA 27624 >seq17418 Length=39954 Score = 131 bits (144), Expect = 2e-25 Identities = 137/179 (77%), Gaps = 7/179 (4%) Strand=Plus/Plus Query 33617 AATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 33676 ||| | |||||||||| ||||| || ||||| || |||||||||||||||||||| || Sbjct 733 AATCAGTTCGTTAGAATGAGTGAGCCCTGGCATGAGCCCACGCTTTTTAAGCCAAAAAAT 792 Query 33677 GGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC 33736 ||| ||||| ||||| ||| ||||||||||| || ||||| || || ||||||||||| Sbjct 793 GGAGGCGAAAGATCCACTAAAAAAGATTCCTTCGACAGCAGCGAACGCGATAAGTCTCTC 852 Query 33737 TCCATAACCGGCGCTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTT 33790 | || | |||| || ||| ||||| ||||||| ||||||||||| || Sbjct 853 GGC--AAATGACGCTTTCTTGTCCGAAATCCAACGGAGAGCCCAGTCGGCCTTCTTCTT 909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629669459027760