Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq18085 215 7e-51 seq17418 113 6e-20 >seq18085 Length=168442 Score = 215 bits (238), Expect = 7e-51 Identities = 483/722 (67%), Gaps = 10/722 (1%) Strand=Plus/Plus Query 65981 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 66040 ||||||||| |||||||| || || | || || || || ||| |||||||| || Sbjct 29841 TTCGAACTCTTCTCCCCAGCAATCATCAAGCCCTGGGCACTCGCACGGGCACATCAAAGA 29900 Query 66041 CCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 66097 ||| || | |||||| || |||||||| || | ||| || | ||| || || | Sbjct 29901 CCAATCC---TGATCCTTTTCGACACGTTTCATGAACAAATCTGGCACCCAGAGTGCCAG 29957 Query 66098 AAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 66157 ||| | ||| | | | | || ||| ||| || || || || | ||| | Sbjct 29958 AAACAGATCACGAGCACGCTCCTCTTCGGGTCCAGTGTTTTTGCGGAGTGAAACAAACTC 30017 Query 66158 CATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 66217 | |||||| |||||||| |||| ||| ||||| | |||| || || ||||| || Sbjct 30018 GAAAATATCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGCTCCCGGGCGCTTGTTGCC 30077 Query 66218 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 66277 |||||||| | ||| | ||| ||||| || || || | | ||| ||||| | || || Sbjct 30078 ACCCTGATCGACGTAACGAGCAGTGTTGTTGTAGACGCGAAGCATCGGAATCAGTCCGTT 30137 Query 66278 GGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAA--TTGAT 66335 || || || ||||| || | || ||| | |||||||| || | |||| Sbjct 30138 CGACGTTCCGTTGGTGCCAGCAATCACCGATCCGGTGGCACGAATCTTGTGCACGTTGA- 30196 Query 66336 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 66395 |||| ||||| ||||| | || || || | |||||| |||||| ||| |||||||| Sbjct 30197 -GACCGATTCCACCTGCGCTCTTCGATATAAGGGCGCATTGTTTTAGCGTGTCATAGATT 30255 Query 66396 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 66455 ||| || ||||| |||| | || || || || |||||||| | || | Sbjct 30256 CCCAGAATCGAGTCATCACTCATCGTGAGCAGGAAGCACGACGACATTTGTGGCCGGCAT 30315 Query 66456 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 66515 ||||| | || || | || ||||| |||||||| | | ||| || | | |||| Sbjct 30316 GTTCCAGAGTTGAAAAGAGTTGGAGAGGCGTGCGTCATGAACCGTTCCGACATCAAATTG 30375 Query 66516 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 66575 ||||| || || ||||| | ||||| | || ||||| | ||||||||||| ||| Sbjct 30376 TACGTTTCGATGGCTGAAGCGATATCTTCTCCGTGTATTCCGATGGCGACACGCATCAAC 30435 Query 66576 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 66635 || |||||||| | ||| || |||| |||||||| || | | |||||| || | Sbjct 30436 ATCTGCTGAGGACGTTCGACAATCTCCTTGTTTATCTTGAGAAGGTAGGAACGCTCAAGC 30495 Query 66636 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 66695 ||||| || || || || |||| || |||| || ||||| | ||| | ||||||||| Sbjct 30496 GTTTTGAAGCCGAAGAAGGTGTACGAGTAGTCGCGGTCGTAGACAATCGCTGAGTTGAGT 30555 Query 66696 TT 66697 || Sbjct 30556 TT 30557 Score = 113 bits (124), Expect = 6e-20 Identities = 293/441 (66%), Gaps = 13/441 (3%) Strand=Plus/Plus Query 64860 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 64919 || || ||||| || | ||||||||||||||| || || || ||||||||||||| Sbjct 27189 GCCGGCTTCGTGCGCAAATAGTACATTCCCGTCTTGAGTCCCTTCTTCCATCCGTAAAAG 27248 Query 64920 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 64979 ||||| || | ||| || || || | || ||||| || |||| || || | Sbjct 27249 TGCATCGAGGTGATGGTGGCGTAGCTAGGCTTGGCCATATGAATGTTCAACGACTGCGAT 27308 Query 64980 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 65039 ||||| ||| ||||||| | ||| || ||||| | || ||| |||||||||||| ||| Sbjct 27309 TGATCAATGTAGGCTCCACGGTCCGCCGCCATCTCGATAATCTCCTTTTGTGGAATCTCC 27368 Query 65040 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTT-------TGTATTCTGAA 65091 || | ||| || | ||| || | ||| |||| || ||| || || | Sbjct 27369 CACACAGTGCGGTACAGCTC-CTGGAGATCGGTCGGAA--TTCCCTCAATGTCTT-TG-A 27423 Query 65092 TGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGG 65151 ||||||| | || || | | ||||| |||||||| ||||| ||| | ||| Sbjct 27424 TGGATCCGTTGTTGGCAATCAGACGGTTCTTCATCTCATCGTTCCACAATCCACGCTCCA 27483 Query 65152 TTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAG 65211 || | | || | || || || || | || || || || || | || | |||| Sbjct 27484 CCAAGTCCTTGAGCATGTGTGGGTTGACAATCTGGAAGTCACCGGAGAGCACACGACGAG 27543 Query 65212 TGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTG 65271 ||| || || ||| ||||| || | |||||||| ||||| | || || ||||| | Sbjct 27544 AGTAGATGTTTGAGGTGTACGGCTCGATCGACTCATTGTTTCCGAGTATCTGGGCAGTGG 27603 Query 65272 ATGCAGTCGGCATAGGTGCCA 65292 | || |||||||| || |||| Sbjct 27604 AAGCCGTCGGCATTGGAGCCA 27624 >seq17418 Length=39954 Score = 113 bits (124), Expect = 6e-20 Identities = 133/179 (74%), Gaps = 7/179 (4%) Strand=Plus/Plus Query 36193 AATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 36252 ||| | |||||| ||| ||||| || ||||| || |||||||||||||||||||| || Sbjct 733 AATCAGTTCGTTAGAATGAGTGAGCCCTGGCATGAGCCCACGCTTTTTAAGCCAAAAAAT 792 Query 36253 GGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTC 36312 ||| || || |||||| ||| || |||||||| || || || || || ||||||||||| Sbjct 793 GGAGGCGAAAGATCCACTAAAAAAGATTCCTTCGACAGCAGCGAACGCGATAAGTCTCTC 852 Query 36313 TCCATAACCGGCACTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTT 36366 | || | | || || ||| ||||| ||||||| ||||||||||| || Sbjct 853 GGC--AAATGACGCTTTCTTGTCCGAAATCCAACGGAGAGCCCAGTCGGCCTTCTTCTT 909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658017989530280