Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq17868 114 1e-20 >seq17868 Length=20976 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || |||||||||||| | |||| || |||||||| || || Sbjct 6172 GTTGACTCCTTCTGGATGTTATAATCGGAGAGGGTGCGACCATCCTCGAGCTGCTTTCCG 6113 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || | ||||||||| ||||| || ||||| ||||| ||| || || Sbjct 6112 GCGAAGATGAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTA 6053 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | ||||||| || ||| ||||| | ||| | ||| || |||||||| ||| Sbjct 6052 ACATTTTCGATGGTGTCGGAGGCCTCAACCTCGAGGGTGATCGTTTTTCCGGTCAAAGTT 5993 Query 139748 TTTACGAATATTTGCATA 139765 || ||||| ||||||||| Sbjct 5992 TTGACGAAAATTTGCATA 5975 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||| | ||| | || | || ||||| ||||||||||| || || | Sbjct 7114 CCTCCTCGGAGACGGAGAACGAGATGGAGTGTCGACTCCTTTTGAATGTTGTAGTCCGAC 7055 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| | || || || || ||||||| | ||| || || || || Sbjct 7054 AGGGTGCGACCATCTTCCAATTGCTTTCCGGCGAAGATCAGTCTTTGTTGGTCTGGTGGG 6995 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || |||||||| |||||| ||| | | ||| | ||||||| || ||| ||| Sbjct 6994 ATTCCCTCTTTGTCTTGGATTTTGGCTTTGACATTTTCGATAGTGTCGGAGGCCTCGACC 6935 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | ||||| |||||||| || || || || |||||||| Sbjct 6934 TCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 6888 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| | |||| ||| ||||||||||| || Sbjct 7588 GTTGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCGTCCTCGAGCTGTTTTCCG 7529 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || ||||||| | ||||||||| || || || ||||| ||||| ||| || || Sbjct 7528 GCGAAGATCAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTG 7469 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | ||||||| || || ||||||| || | ||||| |||||||| || Sbjct 7468 ACATTTTCGATGGTGTCGGAGGCTTCGACCTCAAGCGTGATGGTCTTTCCGGTCAAAGTC 7409 Query 139748 TTTACGAATATTTGCAT 139764 || || || |||||||| Sbjct 7408 TTCACAAAAATTTGCAT 7392 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| | |||| ||| |||||||| || || Sbjct 6400 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 6341 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||| || || |||||||| || || || ||||||||||| ||| || || Sbjct 6340 GCGAAGATAAGGCGCTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTG 6281 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | ||| | ||||||| || ||| ||||| | ||| | ||||| || || | || Sbjct 6280 ACATTTTCAATGGTGTCGGAGGCCTCAACCTCGAGGGTGATGGTCTTTCCTGTGAGGGTC 6221 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| || ||||| Sbjct 6220 TTCACGAAGATCTGCAT 6204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 495947319546400