Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq18085 248 1e-60 seq17418 122 1e-22 >seq18085 Length=168442 Score = 248 bits (274), Expect = 1e-60 Identities = 490/722 (68%), Gaps = 10/722 (1%) Strand=Plus/Plus Query 79860 TTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCAGGACACATCAACGA 79919 ||||||||| |||||||| ||| || | || || || ||| || |||||||| || Sbjct 29841 TTCGAACTCTTCTCCCCAGCAATCATCAAGCCCTGGGCACTCGCACGGGCACATCAAAGA 29900 Query 79920 CCACTCTCCATCATCCTTT---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 79976 ||| || | ||||||| || |||||||| || | ||| || | ||| || || | Sbjct 29901 CCAATCC---TGATCCTTTTCGACACGTTTCATGAACAAATCTGGCACCCAGAGTGCCAG 29957 Query 79977 AAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 80036 ||| ||||| | | | | ||| ||| ||| || || || || | ||| | Sbjct 29958 AAACAGATCACGAGCACGCTCCTCTTCGGGTCCAGTGTTTTTGCGGAGTGAAACAAACTC 30017 Query 80037 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCC 80096 | |||||| | |||||||| |||| ||| ||||| | ||||||| || ||||| || Sbjct 30018 GAAAATATCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGCTCCCGGGCGCTTGTTGCC 30077 Query 80097 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 80156 |||||||| | ||| | ||| ||||| || || || | | ||| ||||| | || || Sbjct 30078 ACCCTGATCGACGTAACGAGCAGTGTTGTTGTAGACGCGAAGCATCGGAATCAGTCCGTT 30137 Query 80157 GGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAA--TTGAT 80214 || || || ||||| || | || ||| |||||||||| || | |||| Sbjct 30138 CGACGTTCCGTTGGTGCCAGCAATCACCGATCCGGTGGCACGAATCTTGTGCACGTTGA- 30196 Query 80215 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 80274 |||| ||||| ||||| | || || || | |||||| |||||| ||| |||||||| Sbjct 30197 -GACCGATTCCACCTGCGCTCTTCGATATAAGGGCGCATTGTTTTAGCGTGTCATAGATT 30255 Query 80275 CCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 80334 ||| || |||||| |||| | || || || || |||||||| | || | Sbjct 30256 CCCAGAATCGAGTCATCACTCATCGTGAGCAGGAAGCACGACGACATTTGTGGCCGGCAT 30315 Query 80335 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTG 80394 ||||| | || || | || ||||| |||||||| | | ||| |||| | |||| Sbjct 30316 GTTCCAGAGTTGAAAAGAGTTGGAGAGGCGTGCGTCATGAACCGTTCCGACATCAAATTG 30375 Query 80395 TACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAAC 80454 ||||| || || ||||| | ||||| | || ||||| | ||||||||||| ||| Sbjct 30376 TACGTTTCGATGGCTGAAGCGATATCTTCTCCGTGTATTCCGATGGCGACACGCATCAAC 30435 Query 80455 ATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAA 80514 || |||||||| | ||| || |||| || ||||| || | | ||| || || | Sbjct 30436 ATCTGCTGAGGACGTTCGACAATCTCCTTGTTTATCTTGAGAAGGTAGGAACGCTCAAGC 30495 Query 80515 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 80574 ||||| || || || || |||| || |||| || ||||| | ||| | ||||||||| Sbjct 30496 GTTTTGAAGCCGAAGAAGGTGTACGAGTAGTCGCGGTCGTAGACAATCGCTGAGTTGAGT 30555 Query 80575 TT 80576 || Sbjct 30556 TT 30557 Score = 100 bits (110), Expect = 4e-16 Identities = 290/441 (66%), Gaps = 13/441 (3%) Strand=Plus/Plus Query 78739 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAGAAA 78798 || || ||||| || | ||||||||||||||| || || || |||||||||| || Sbjct 27189 GCCGGCTTCGTGCGCAAATAGTACATTCCCGTCTTGAGTCCCTTCTTCCATCCGTAAAAG 27248 Query 78799 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 78858 ||||| || | ||| || || || | || ||||| || |||| || || | Sbjct 27249 TGCATCGAGGTGATGGTGGCGTAGCTAGGCTTGGCCATATGAATGTTCAACGACTGCGAT 27308 Query 78859 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 78918 ||||| ||| ||||||| | ||| || ||||| | || ||| |||||||||||| ||| Sbjct 27309 TGATCAATGTAGGCTCCACGGTCCGCCGCCATCTCGATAATCTCCTTTTGTGGAATCTCC 27368 Query 78919 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTT-------TGTATTCTGAA 78970 || | ||| || | ||| || | ||| |||| || ||| || || | Sbjct 27369 CACACAGTGCGGTACAGCTC-CTGGAGATCGGTCGGAA--TTCCCTCAATGTCTT-TG-A 27423 Query 78971 TGGATCCACCATCTGCCATAATCCTATTCTTGATCTCTTCATTCCATAATTTTCTCTCGG 79030 ||||||| | || || | | ||||| ||||| || ||||| ||| | ||| Sbjct 27424 TGGATCCGTTGTTGGCAATCAGACGGTTCTTCATCTCATCGTTCCACAATCCACGCTCCA 27483 Query 79031 TTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAG 79090 || | | || | || || || || | || || || || || | || | |||| Sbjct 27484 CCAAGTCCTTGAGCATGTGTGGGTTGACAATCTGGAAGTCACCGGAGAGCACACGACGAG 27543 Query 79091 TGTAAATATTACTGGTATATGGTTCCACCGATTCATTATTTCCCAAAATTTGAGCAGTTG 79150 ||| || || ||| || || || | ||| ||||| ||||| | || || ||||| | Sbjct 27544 AGTAGATGTTTGAGGTGTACGGCTCGATCGACTCATTGTTTCCGAGTATCTGGGCAGTGG 27603 Query 79151 ATGCCGTTGGCATAGGTGCCA 79171 | ||||| ||||| || |||| Sbjct 27604 AAGCCGTCGGCATTGGAGCCA 27624 >seq17418 Length=39954 Score = 122 bits (134), Expect = 1e-22 Identities = 135/179 (75%), Gaps = 7/179 (4%) Strand=Plus/Plus Query 49995 AATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 50054 ||| |||||||| ||| ||||| || ||||| || |||||||||||||||||||| || Sbjct 733 AATCAGTTCGTTAGAATGAGTGAGCCCTGGCATGAGCCCACGCTTTTTAAGCCAAAAAAT 792 Query 50055 GGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTC 50114 ||| || || || ||| ||| ||||||||||| || || || || || | ||||||||| Sbjct 793 GGAGGCGAAAGATCCACTAAAAAAGATTCCTTCGACAGCAGCGAACGCGATAAGTCTCTC 852 Query 50115 TCCATAACTGGCGCTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCttttt 50168 | || || |||| || ||| ||||| ||||||| ||||||||||| || Sbjct 853 GGC--AAATGACGCTTTCTTGTCCGAAATCCAACGGAGAGCCCAGTCGGCCTTCTTCTT 909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718099854199880