Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq17868 89.7 4e-13 >seq17868 Length=20976 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 42907 TGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGT 42966 |||| ||| |||||| || | ||||| ||||| | || || |||| || | ||| Sbjct 7594 TGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCGTCCTCGAGCTGT 7535 Query 42967 TTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAAC 43026 || ||||| || |||| || || ||||| | || | ||||| || || |||| Sbjct 7534 TTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTG 7475 Query 43027 TCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTT 43086 | ||||| | | | |||||| || ||||| || | ||| || || |||||||| Sbjct 7474 GCCTTGACATTTTCGATGGTGTCGGAGGCTTCGACCTCAAGCGTGATGGTCTTTCCGGTC 7415 Query 43087 AGAGTTTTCACAAAAATTTGCATT 43110 | ||| |||||||||||||||||| Sbjct 7414 AAAGTCTTCACAAAAATTTGCATT 7391 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 ||||| || | ||| |||||||| | |||||| ||||||||||| ||| | || ||| Sbjct 6640 ACCAAGTGAAGTGTGGATTCCTTTTGAATATTGTAGTCGGACAATGTGCGTCCATCTTCC 6581 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | || || |||||||| |||| || || || || | || | ||||| || || Sbjct 6580 AGCTGCTTTCCGGCAAAGATCAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGA 6521 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 || |||| || | ||| ||||||| || ||||| || | || || || ||| Sbjct 6520 ATTTTTGCTTTCACGTTCTCAATTGTGTCGGAGGCTTCGACTTCCAATGTGATCGTCTTT 6461 Query 43081 CCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 ||||| | ||| || || || || |||||| Sbjct 6460 CCGGTCAAAGTCTTGACGAAGATCTGCATT 6431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381282139675386