Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq18085 241 2e-58 seq17418 113 6e-20 >seq18085 Length=168442 Score = 241 bits (266), Expect = 2e-58 Identities = 486/719 (68%), Gaps = 4/719 (1%) Strand=Plus/Plus Query 71943 TTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATTCGGACACATCAATGA 72002 ||||||||| |||||||| || || | || || || || ||| |||||||| || Sbjct 29841 TTCGAACTCTTCTCCCCAGCAATCATCAAGCCCTGGGCACTCGCACGGGCACATCAAAGA 29900 Query 72003 CCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAA 72062 ||| || ||| | | || |||||||| || | ||| || | ||| || || | ||| Sbjct 29901 CCAATCCTGATCCTTTTCGACACGTTTCATGAACAAATCTGGCACCCAGAGTGCCAGAAA 29960 Query 72063 TAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCAT 72122 ||||| | | | | ||| ||| ||| || || || || | ||| | | Sbjct 29961 CAGATCACGAGCACGCTCCTCTTCGGGTCCAGTGTTTTTGCGGAGTGAAACAAACTCGAA 30020 Query 72123 AATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGGCCGTTTGTTTCCTCC 72182 |||||| | |||||||| |||| ||| ||||| | ||||||| || ||||| || || Sbjct 30021 AATATCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGCTCCCGGGCGCTTGTTGCCACC 30080 Query 72183 CTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGA 72242 |||||| | ||| | ||| ||||| || || || | | ||| ||||| | || || || Sbjct 30081 CTGATCGACGTAACGAGCAGTGTTGTTGTAGACGCGAAGCATCGGAATCAGTCCGTTCGA 30140 Query 72243 TGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAA--TTGATAGA 72300 | || ||||| || | || ||| |||||||||| ||| | |||| || Sbjct 30141 CGTTCCGTTGGTGCCAGCAATCACCGATCCGGTGGCACGAATCTTGTGCACGTTGA--GA 30198 Query 72301 CCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCC 72360 || ||||| ||||| | || || || | |||||| |||||| ||| |||||||| ||| Sbjct 30199 CCGATTCCACCTGCGCTCTTCGATATAAGGGCGCATTGTTTTAGCGTGTCATAGATTCCC 30258 Query 72361 TCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTT 72420 || ||||| |||| | || || || || |||||||| | || | ||| Sbjct 30259 AGAATCGAGTCATCACTCATCGTGAGCAGGAAGCACGACGACATTTGTGGCCGGCATGTT 30318 Query 72421 CCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTAC 72480 || | || || | || ||||| |||||||| | | ||| |||| | ||||||| Sbjct 30319 CCAGAGTTGAAAAGAGTTGGAGAGGCGTGCGTCATGAACCGTTCCGACATCAAATTGTAC 30378 Query 72481 GTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAACATA 72540 || || || ||||| | ||||| | |||||||| | ||||||||||| ||||| Sbjct 30379 GTTTCGATGGCTGAAGCGATATCTTCTCCGTGTATTCCGATGGCGACACGCATCAACATC 30438 Query 72541 TGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAAAGTT 72600 |||||||| | ||| || |||| || ||||| || | | |||||| || | ||| Sbjct 30439 TGCTGAGGACGTTCGACAATCTCCTTGTTTATCTTGAGAAGGTAGGAACGCTCAAGCGTT 30498 Query 72601 TTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGTTT 72659 || || || || || |||| || |||| || ||||| | ||| | || |||||||| Sbjct 30499 TTGAAGCCGAAGAAGGTGTACGAGTAGTCGCGGTCGTAGACAATCGCTGAGTTGAGTTT 30557 Score = 127 bits (140), Expect = 3e-24 Identities = 304/453 (67%), Gaps = 14/453 (3%) Strand=Plus/Plus Query 70823 CGGCTTTCGTACGTAGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAAT 70882 |||||| ||| || | ||||||||| || || || || || ||||||||||||| | Sbjct 27191 CGGCTT-CGTGCGCAAATAGTACATTCCCGTCTTGAGTCCCTTCTTCCATCCGTAAAAGT 27249 Query 70883 GCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTT 70942 |||| || | ||| |||||||| | ||| || ||||| |||| |||||| || Sbjct 27250 GCATCGAGGTGATGGTGGCGTAGCTAGGCTTGGCCATATGAATGTTCAACGACTGCGATT 27309 Query 70943 GATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCC 71002 |||| ||| ||||||| | ||| || ||||| | || ||| |||||||||||| |||| Sbjct 27310 GATCAATGTAGGCTCCACGGTCCGCCGCCATCTCGATAATCTCCTTTTGTGGAATCTCCC 27369 Query 71003 AAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTT-------TGTATTCTGAAT 71054 | | ||| || | ||| || | ||| |||| || ||| || || || Sbjct 27370 ACACAGTGCGGTACAGCTC-CTGGAGATCGGTCGGAA--TTCCCTCAATGTCTT-TG-AT 27424 Query 71055 GGATCCACCATCTGCAATAATCCTATTTTTGATCTCTTCATTCCATAATTTTCTCTCGGT 71114 |||||| | ||||| | | || || ||||| || ||||| ||| | ||| Sbjct 27425 GGATCCGTTGTTGGCAATCAGACGGTTCTTCATCTCATCGTTCCACAATCCACGCTCCAC 27484 Query 71115 TAAAACTCTAAGGAGATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGT 71174 || | | || | || || || || | || || || || || | || | ||||| Sbjct 27485 CAAGTCCTTGAGCATGTGTGGGTTGACAATCTGGAAGTCACCGGAGAGCACACGACGAGA 27544 Query 71175 GTAAATATTACTGGTATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGA 71234 ||| || || ||| ||||| || | |||||||| ||||| | || || ||||| || Sbjct 27545 GTAGATGTTTGAGGTGTACGGCTCGATCGACTCATTGTTTCCGAGTATCTGGGCAGTGGA 27604 Query 71235 TGCAGTCGGCATAGGTGCCACCAATAGACTATT 71267 || |||||||| || |||| | ||||| || Sbjct 27605 AGCCGTCGGCATTGGAGCCATGAGAAGACTGTT 27637 >seq17418 Length=39954 Score = 113 bits (124), Expect = 6e-20 Identities = 133/179 (74%), Gaps = 7/179 (4%) Strand=Plus/Plus Query 42100 AATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 42159 ||| | |||||| ||| ||||| || ||||| || |||||||||||||||||||| || Sbjct 733 AATCAGTTCGTTAGAATGAGTGAGCCCTGGCATGAGCCCACGCTTTTTAAGCCAAAAAAT 792 Query 42160 AGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTC 42219 || || || |||||| ||| ||||||||||| || || || || || ||||||||||| Sbjct 793 GGAGGCGAAAGATCCACTAAAAAAGATTCCTTCGACAGCAGCGAACGCGATAAGTCTCTC 852 Query 42220 TCCATAACCGGCACTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTT 42273 | || | | || || ||| ||||| ||||||| ||||||||||| || Sbjct 853 GGC--AAATGACGCTTTCTTGTCCGAAATCCAACGGAGAGCCCAGTCGGCCTTCTTCTT 909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670981339670920