Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq17012 141 1e-28 seq18085 113 7e-20 seq17418 102 1e-16 >seq17012 Length=89455 Score = 141 bits (156), Expect = 1e-28 Identities = 394/604 (65%), Gaps = 14/604 (2%) Strand=Plus/Minus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||||||||||| | || | || || ||||| | | ||||||||| || ||||| Sbjct 23578 TTGCGGTAAAAGATCAGCGCGCCACGTGGTCCTCTCAACGACTTGTGCGTGGTGGTGGTG 23519 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221 |||| ||| ||||| || || || |||| | | | || | | |||| ||| Sbjct 23518 ACAACGTCCGCGTACTCGAATGGCGATGGGATGAGTCCGGCGGCGACGAGTCCCGAGATG 23459 Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281 || || ||||| | ||| || || | || || || ||||| | ||||| || | Sbjct 23458 TGAGCCATATCCGACATGAGGAAAGCTCCAGCCTTGTCAGCAATTTTGCGGAAGCGCGCA 23399 Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341 ||||| | | |||| ||||| | | || || ||||| | | | || ||| || Sbjct 23398 TAGTCGAGATGACGAGCGTAGCACGAGATTCCCGCAATGATGACCTTTGGGCGGAAGAGC 23339 Query 127342 TTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTAC 127401 ||| |||| | || ||| ||||||| | ||| || | | || ||||||||||| Sbjct 23338 AGCGCATTCTCCTCGAGCTTGTCATAGTCAATGAGCCCCGATTTCGGGTCCACCTTGTAG 23279 Query 127402 GGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTTGCG------------GAATCCG 127449 ||||| | |||||| || || || ||||| ||||| ||||||| Sbjct 23278 GGCATCGACTGGAAAAACTCCGAGGTGGCCGACACTTTGCGAGCGGGCGTGAAGAATCCG 23219 Query 127450 TGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAACG 127509 ||||||| ||| || || ||||||| || || ||||| || | |||| | |||| Sbjct 23218 TGCGTCAAGTGTCCACCATCGGGCAAGTCCAGGCCCATAATGCGGCCGTTTGCGCCAACG 23159 Query 127510 ATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACACTCCC 127569 || | ||||| ||||||||||||||| || || || | ||| || || ||| Sbjct 23158 ATAGCCGTGTAGACGGCAAAGTTGGCCGGTGATCCGGACAGAGATTGCACGTTGACACCC 23099 Query 127570 CATTCGGACTCGTTCAAAT-TGAACGCTCTGAGACATCGCTGCTGTGCTAGCAGTTCGAT 127628 || | || || | || ||| ||| || ||| ||| | || ||||| || || Sbjct 23098 CACTTGG-CTGGGTCCAATCCAAACACTTCGAGGGCTCGTTTTTGGCAGAGCAGCTCCAT 23040 Query 127629 GCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCGAGTACTT 127688 | || || || ||||| ||||||||||| || || || ||||| |||||| Sbjct 23039 TTGGTCAATGAATTCGTTGCCACCATAGTAGCGGGCGCCCGGGTAGCCCTCGCTGTACTT 22980 Query 127689 GTTG 127692 |||| Sbjct 22979 GTTG 22976 >seq18085 Length=168442 Score = 113 bits (124), Expect = 7e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 98046 ACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGTGTCTAC 98105 ||||| ||||||||||| ||| | | ||||| ||||| || ||| | || | |||| Sbjct 27376 ACTGTGTGGGAGATTCCACAAAAGGAGATTATCGAGATGGCGGCGGACCGTGGAGCCTAC 27317 Query 98106 ATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGTATGACT 98165 ||||| || || ||||| || | | | ||| |||| | |||| || || Sbjct 27316 ATTGATCAATCGCAGTCGTTGAACATTCATATGGCCAAGCCTAGCTACGCCACCATCACC 27257 Query 98166 TCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCTGAGAACA 98225 ||||| |||||||||| |||||| ||||| ||||||||||| ||||||||| || | || Sbjct 27256 TCGATGCACTTTTACGGATGGAAGAAGGGACTCAAGACGGGAATGTACTATTTGCGCACG 27197 Query 98226 AAGTCGGCCACCAATGC 98242 ||| ||||| ||| || Sbjct 27196 AAGCCGGCCGTCAACGC 27180 Score = 107 bits (118), Expect = 3e-18 Identities = 169/242 (70%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 96876 CAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGAC 96935 ||||| ||||| || || || || || | ||| ||||| |||| || |||||||| || Sbjct 30083 CAGGGTGGCAACAAGCGCCCGGGAGCGTTCGCCATCTACCTGGAGCCGTGGCACGCCGAT 30024 Query 96936 GTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGAC 96995 |||| || ||| | | ||||||||| |||| ||||||| || || | || Sbjct 30023 ATTTTCGAGTTTGTTTCACTCCGCAAAAACACTGGACCCGAAGAGGAGCGTGCTCGTGAT 29964 Query 96996 TTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTAC 97055 ||||| ||||||||||||||||||||||||||||| || ||| | | | | | Sbjct 29963 CTGTTTCTGGCACTCTGGGTGCCAGATTTGTTCATGAAACGTGTCGAAAAGGATCAGGAT 29904 Query 97056 TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTT 97115 ||| | |||||||| | || || || || ||||||||||| |||||||| Sbjct 29903 TGGTCTTTGATGTGCCCGTGCGAGTGCCCAGGGCTTGATGATTGCTGGGGAGAAGAGTTC 29844 Query 97116 GA 97117 || Sbjct 29843 GA 29842 >seq17418 Length=39954 Score = 102 bits (112), Expect = 1e-16 Identities = 362/567 (64%), Gaps = 49/567 (9%) Strand=Plus/Minus Query 125011 ATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGG 125070 |||| | || |||||| | ||||||||||| || || || ||||||||||| || | Sbjct 1301 ATCACCAAATCTGGGAATTCTACAAAAAGGCAGTAGCGTCATTCTGGACGGTCGAGGAAG 1242 Query 125071 TCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGT 125130 |||||||| ||| || || | |||||||||| ||| || ||||| | | | Sbjct 1241 TCGATCTGGGCAAAGATATGAATGATTGGGAGA---AGATGAATGGTGATGAGCAATACT 1185 Query 125131 TTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGT 125190 |||| || | || | ||||| || || | ||||||||||||||||| || ||| || Sbjct 1184 TTATCTCACGAGTTCTCGCCTTTTTCGCTGCTTCCGATGGAATCGTCAATGAGAATTTGG 1125 Query 125191 T------GAC--ACGATTCTC---TCAAGAGT-----------TGA-CCATTC------- 125220 | ||| | ||| || | || ||| ||| | ||| Sbjct 1124 TAAATACGACTTAAAATTTTCAGTTTAAAAGTATTGTTCAGTGTGAGCGCTTCTCGAACG 1065 Query 125221 ------------CAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGC 125268 |||||| | ||| || |||||||||||| || ||||| | | Sbjct 1064 AAGTGAAAGTATCAGAGGCCCGATTCTTCTATGGATTCCAAATCGCCATCGAGAATATTC 1005 Query 125269 ACTCGGAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCGCAACGTA--AACA 125326 |||||||||||||||| | || || || | ||||||||| || || ||| | || Sbjct 1004 ACTCGGAAATGTACTCGAAGCTCATCGAGACGTACATTCGAGA--CGAAACAGAGCGTCA 947 Query 125327 CATGCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGAT 125386 || || |||||||||| | | | || || || ||||| | |||| | Sbjct 946 CACACTGCTTAACGCAATTTTCGAGTTTGAGTTCATCAAGAAGAAGGCCGACTGGGCTCT 887 Query 125387 TCGGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGT 125446 || ||||| ||| | || | || | ||||| ||||| | || ||||| || || Sbjct 886 CCGTTGGATTTCGGACAAGAAAGCGTCATTTGCCGAGAGACTTATCGCGTTCGCTGCTGT 827 Query 125447 AGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACT 125506 || || ||||| ||| || ||| || |||| |||||||| || ||||| || || Sbjct 826 CGAAGGAATCTTTTTTAGTGGATCTTTCGCCTCCATTTTTTGGCTTAAAAAGCGTGGGCT 767 Query 125507 CATGCCCGGACTGACGCACAGTAACGA 125533 |||||| || || || || |||||| Sbjct 766 CATGCCAGGGCTCACTCATTCTAACGA 740 Score = 93.3 bits (102), Expect = 6e-14 Identities = 153/217 (71%), Gaps = 14/217 (6%) Strand=Plus/Minus Query 125646 GATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGC 125705 || || || | ||| ||||| || || || |||||| | || || ||| ||||||||| Sbjct 592 GACGCAGTCAAGATCGAACAGGAATTCCTTACCGAAGCGCTGCCAGTCGACATGATTGGA 533 Query 125706 ATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAG 125765 |||||||| || |||| | ||||||| |||||||| || |||| ||| || | Sbjct 532 ATGAACTGTCGTCTCATGTCCCAGTACATTGAGTTTGTCGCCGATCATCTGCTT-----G 478 Query 125766 TTGA--TTGGCCGC---AAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCA 125820 |||| | || | ||| | ||||| || ||||| || || |||||| || | Sbjct 477 TTGAACTCGGATGTGAAAAGCTGTACAAGAAGAAAAATCCGTTCGACTTCATGG--AGAA 420 Query 125821 TATCACTA--GAGGGTAAGACCAACTTTTTCGAGAAG 125855 |||| | | || || ||||| ||||||||||||||| Sbjct 419 TATCTCGATTGATGGAAAGACAAACTTTTTCGAGAAG 383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740884893612920