Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq17418 82.4 7e-11 >seq17418 Length=39954 Score = 82.4 bits (90), Expect = 7e-11 Identities = 139/201 (69%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 12863 TGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATTTTCC 12922 ||||| || ||| | || || ||||||||||| ||||| || | ||| ||||| ||| Sbjct 366 TGATACTCCGAAACGCGCTTCTCGAAAAAGTTTGTCTTTCCATCAATCGAGATATTCTCC 425 Query 12923 ATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAACAAT 12982 || || ||||| ||||||||| || |||| ||| || | ||| ||||| Sbjct 426 ATGAAGTCGAACGGATTTTTCTTCTTGTACAGCTTTTCACATCCGAGTTC----AACAAG 481 Query 12983 CTG----TCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038 | | || || |||||||| |||||||| ||| | | |||||||||||| || | Sbjct 482 CAGATGATCGGCGACAAACTCAATGTACTGGGACATGAGACGACAGTTCATTCCAATCAT 541 Query 13039 TTTTACAGGCATAGCTTCTGT 13059 | || |||| ||||| || Sbjct 542 GTCGACTGGCAGCGCTTCGGT 562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430883561863434