Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq17868 138 1e-27 >seq17868 Length=20976 Score = 138 bits (152), Expect = 1e-27 Identities = 174/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || ||||||||| | || | |||||||| | || ||||||||||| | Sbjct 6670 AAAATTTGCATTCCTCCTCTGAGGCGGAGAACCAAGTGAAGTGTGGATTCCTTTTGAATA 6611 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || ||| || ||| ||| |||||||| |||||| ||||||| | ||||||| Sbjct 6610 TTGTAGTCGGACAATGTGCGTCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGTCTTTGC 6551 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || ||||| || || ||||| ||||| | ||||||||| || ||| | | ||||| Sbjct 6550 TGGTCTGGTGGGATTCCTTCCTTGTCTTGAATTTTTGCTTTCACGTTCTCAATTGTGTCG 6491 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | ||||| || | ||||| || ||||| || | ||| || || ||||||||||| Sbjct 6490 GAGGCTTCGACTTCCAATGTGATCGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 6432 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || ||||||||| | || | ||| | ||| | ||| || ||||| || | ||| || || Sbjct 7622 CATTCCTCCTCTGAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTC 7563 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | | |||| ||||| |||||||||||| | ||||| | ||||||||||||||| Sbjct 7562 GGAGAGAGTGCGACCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGTCTTTGCTGATCTGG 7503 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 || || ||||| ||||| | || || |||||||| ||| ||||| | | || Sbjct 7502 TGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCGGAGGCTTC 7443 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| |||| ||||||||| ||||| || | ||| |||||||| || ||||| Sbjct 7442 GACCTCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTCACAAAAATTTGCAT 7392 Score = 131 bits (144), Expect = 2e-25 Identities = 170/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Minus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || ||||||||| | || | ||| | ||| | ||| || ||||| || | ||||||||| Sbjct 6206 CATTCCTCCTCTGAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTATAATC 6147 Query 94837 GCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCT 94894 | | || || || |||||| ||||| |||||| | ||||| | ||||||||||||| Sbjct 6146 GG--AGAGGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGATCT 6089 Query 94895 GGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGG 94954 |||||||| ||||| ||||| | || || ||||| || ||| ||||| | | Sbjct 6088 GGAGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTAACATTTTCGATGGTGTCGGAGGCC 6029 Query 94955 TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | ||||| |||||||| || | |||||| || || || ||||| Sbjct 6028 TCAACCTCGAGGGTGATCGTTTTTCCGGTCAAAGTTTTGACGAAAATTTGCAT 5976 Score = 113 bits (124), Expect = 4e-20 Identities = 168/238 (71%), Gaps = 3/238 (1%) Strand=Plus/Minus Query 94773 TTTACA---CTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGT 94829 |||||| ||||||| | | || | ||| | ||| | ||| ||||| ||||| | || Sbjct 8360 TTTACATATCTCCTCCACGAAGACGGAGCACAAGGTGAAGAGTGGATTCTTTTTGGATGT 8301 Query 94830 TATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCT 94889 | || ||| | || | |||||| ||||| ||||| | ||||| || | |||| Sbjct 8300 TGTAGTCGGAGAGGGTACGGCCATCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCT 8241 Query 94890 GATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAG 94949 ||||||| ||||| || || ||||| | || || ||||||||| ||| ||||| | Sbjct 8240 GATCTGGGGGAATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCGATGGTGTCGG 8181 Query 94950 CGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| |||| ||||| ||||||||||| | ||| || || ||||| ||||| Sbjct 8180 ATGCTTCGACCTCAAGGGTGATAGTTTTTCCAGTTAAAGTCTTGACGAAGATTTGCAT 8123 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || ||||||||| | ||| | ||| | ||| | || || ||||| || | ||| || || Sbjct 6434 CATTCCTCCTCTAAGTCGGAGCACGAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTC 6375 Query 94837 GCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGG 94896 | | ||| | ||||| ||||| || ||| | ||||| | | ||||||||||| Sbjct 6374 GGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGATCTGG 6315 Query 94897 AGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTC 94956 ||||| ||||||||||| | || || |||||||| | | ||||| | | || Sbjct 6314 TGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAGGCCTC 6255 Query 94957 GACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || | |||||||| ||||| || || || ||||| ||||||||||| Sbjct 6254 AACCTCGAGGGTGATGGTCTTTCCTGTGAGGGTCTTCACGAAGATCTGCAT 6204 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||| |||||||||||| | || || | ||| ||||| ||||| || ||||| || || Sbjct 7775 ATCCTCAAGCTGTTTTCCGGCGAAAATAAGTCTCTGCTGGTCTGGCGGGATACCCTCCTT 7716 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 ||| | || || ||||| || ||| ||||| | | ||||| |||| ||||| Sbjct 7715 GTCTTGGATCTTGGCCTTCACATTTTCGATTGTGTCGGAGGCTTCGACTTCAAGGGTGAT 7656 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| ||||| || || || ||||| ||||||||||| Sbjct 7655 GGTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCAT 7620 Score = 86.0 bits (94), Expect = 6e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 94868 CCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCC 94927 ||| ||||||| | ||| ||||||||||| || || || || ||||| | ||| || || Sbjct 7255 CCGGCAAAGATAAGTCTCTGCTGATCTGGCGGGATTCCCTCCTTGTCTTGAATCTTGGCT 7196 Query 94928 TTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGA 94987 ||||| | | ||||| | || || || | ||||||||||||||||| ||| Sbjct 7195 TTGACATTCTCAATGGTGTCCGATGCCTCAACTTCGAGAGTGATGGTTTTTCCAGTGAGA 7136 Query 94988 GTTTTCACAAAGATCTGCAT 95007 || || || ||||||||||| Sbjct 7135 GTCTTGACGAAGATCTGCAT 7116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448185756306120