Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq18085 233 2e-56 seq17418 136 5e-27 >seq18085 Length=168442 Score = 233 bits (258), Expect = 2e-56 Identities = 487/722 (67%), Gaps = 10/722 (1%) Strand=Plus/Plus Query 63137 TTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGA 63196 ||||||||| |||||||| || || | || || || || ||| |||||||| || Sbjct 29841 TTCGAACTCTTCTCCCCAGCAATCATCAAGCCCTGGGCACTCGCACGGGCACATCAAAGA 29900 Query 63197 CCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 63253 ||| || | |||||| || |||||||| || | ||| || | ||| || || | Sbjct 29901 CCAATCC---TGATCCTTTTCGACACGTTTCATGAACAAATCTGGCACCCAGAGTGCCAG 29957 Query 63254 AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 63313 ||| ||||| | | | | || ||| ||| || || || || | ||| | Sbjct 29958 AAACAGATCACGAGCACGCTCCTCTTCGGGTCCAGTGTTTTTGCGGAGTGAAACAAACTC 30017 Query 63314 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63373 | |||||| | |||||||| |||| ||| ||||| | |||| || || ||||| || Sbjct 30018 GAAAATATCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGCTCCCGGGCGCTTGTTGCC 30077 Query 63374 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTT 63433 |||||||| | ||| | ||| ||||| || || || | | ||| ||||| | ||||| Sbjct 30078 ACCCTGATCGACGTAACGAGCAGTGTTGTTGTAGACGCGAAGCATCGGAATCAGTCCGTT 30137 Query 63434 TGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAATATTACTAA--TTGAT 63491 || | || ||||| || | || ||| |||||||||| || | |||| Sbjct 30138 CGACGTTCCGTTGGTGCCAGCAATCACCGATCCGGTGGCACGAATCTTGTGCACGTTGA- 30196 Query 63492 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATA 63551 |||| ||||| ||||| | || || || | |||||| |||||| |||||||||||| Sbjct 30197 -GACCGATTCCACCTGCGCTCTTCGATATAAGGGCGCATTGTTTTAGCGTGTCATAGATT 30255 Query 63552 CCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 63611 ||| || ||||| |||| | || || || || |||||||| | || | Sbjct 30256 CCCAGAATCGAGTCATCACTCATCGTGAGCAGGAAGCACGACGACATTTGTGGCCGGCAT 30315 Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||| | || || | || ||||| |||||||| | | ||| || | | |||| Sbjct 30316 GTTCCAGAGTTGAAAAGAGTTGGAGAGGCGTGCGTCATGAACCGTTCCGACATCAAATTG 30375 Query 63672 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63731 ||||| || || ||||| | ||||| | || ||||| | ||||||||||| ||| Sbjct 30376 TACGTTTCGATGGCTGAAGCGATATCTTCTCCGTGTATTCCGATGGCGACACGCATCAAC 30435 Query 63732 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63791 || |||||||| | ||| || |||| |||||||| || | | |||||| || | Sbjct 30436 ATCTGCTGAGGACGTTCGACAATCTCCTTGTTTATCTTGAGAAGGTAGGAACGCTCAAGC 30495 Query 63792 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 63851 ||||| || || || || |||| || |||| || ||||| | ||| | ||||||||| Sbjct 30496 GTTTTGAAGCCGAAGAAGGTGTACGAGTAGTCGCGGTCGTAGACAATCGCTGAGTTGAGT 30555 Query 63852 TT 63853 || Sbjct 30556 TT 30557 Score = 118 bits (130), Expect = 1e-21 Identities = 294/441 (67%), Gaps = 13/441 (3%) Strand=Plus/Plus Query 62016 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 62075 || || ||||| || | ||||||||||||||| || || || ||||||||||||| Sbjct 27189 GCCGGCTTCGTGCGCAAATAGTACATTCCCGTCTTGAGTCCCTTCTTCCATCCGTAAAAG 27248 Query 62076 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 62135 ||||| || | ||| || || || | || ||||| || |||| || || | Sbjct 27249 TGCATCGAGGTGATGGTGGCGTAGCTAGGCTTGGCCATATGAATGTTCAACGACTGCGAT 27308 Query 62136 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCC 62195 ||||| ||| ||||||| | ||| || ||||| | || ||| |||||||||||| ||| Sbjct 27309 TGATCAATGTAGGCTCCACGGTCCGCCGCCATCTCGATAATCTCCTTTTGTGGAATCTCC 27368 Query 62196 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTT-------TGTATTCTGAA 62247 || | ||| || | ||| || | ||| |||| || ||| || || | Sbjct 27369 CACACAGTGCGGTACAGCTC-CTGGAGATCGGTCGGAA--TTCCCTCAATGTCTT-TG-A 27423 Query 62248 TGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGG 62307 ||||||| | || || | | ||||| |||||||| ||||| ||| | ||| Sbjct 27424 TGGATCCGTTGTTGGCAATCAGACGGTTCTTCATCTCATCGTTCCACAATCCACGCTCCA 27483 Query 62308 TTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAG 62367 || | | || | || || || || | || || || || || | || | |||| Sbjct 27484 CCAAGTCCTTGAGCATGTGTGGGTTGACAATCTGGAAGTCACCGGAGAGCACACGACGAG 27543 Query 62368 TGTAAATATTACTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTG 62427 ||| || || ||| ||||| || | ||||||||| ||||| | || || ||||| | Sbjct 27544 AGTAGATGTTTGAGGTGTACGGCTCGATCGACTCATTGTTTCCGAGTATCTGGGCAGTGG 27603 Query 62428 ATGCAGTCGGCATAGGTGCCA 62448 | || |||||||| || |||| Sbjct 27604 AAGCCGTCGGCATTGGAGCCA 27624 >seq17418 Length=39954 Score = 136 bits (150), Expect = 5e-27 Identities = 138/179 (77%), Gaps = 7/179 (4%) Strand=Plus/Plus Query 33339 AATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 33398 ||| |||||||| ||| ||||| || ||||| || |||||||||||||||||||| || Sbjct 733 AATCAGTTCGTTAGAATGAGTGAGCCCTGGCATGAGCCCACGCTTTTTAAGCCAAAAAAT 792 Query 33399 GGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC 33458 ||| ||||| |||||| ||| ||||||||||| || ||||| || || ||||||||||| Sbjct 793 GGAGGCGAAAGATCCACTAAAAAAGATTCCTTCGACAGCAGCGAACGCGATAAGTCTCTC 852 Query 33459 TCCATAACCGGCGCTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCTTTTT 33512 | || | |||| || ||| ||||| ||||||| ||||||||||| || Sbjct 853 GGC--AAATGACGCTTTCTTGTCCGAAATCCAACGGAGAGCCCAGTCGGCCTTCTTCTT 909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622800675031720