Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq18085 203 8e-47 >seq18085 Length=168442 Score = 203 bits (224), Expect = 8e-47 Identities = 437/645 (68%), Gaps = 14/645 (2%) Strand=Plus/Minus Query 363439 GATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCG 363498 || ||||| ||||| || ||||| ||||| |||||||| || || || || || | Sbjct 30461 GAGATTGTCGAACGTCCTCAGCAGATGTTGATGCGTGTCGCCATCGGAATACACGGAGAA 30402 Query 363499 GATGTTGATGCCGCGATTGAAACATATAAGCTTCTAAGT--GCTCGTGTATTCACGCACG 363556 ||| | | | | || || ||||| || || || | || | || | | ||||||| Sbjct 30401 GATATCGCTTCAGCCATCGAAACGTACAA--TTTGATGTCGGAACGGTTCATGACGCACG 30344 Query 363557 CCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTC 363616 || | ||||| | | ||| ||||||| | ||||| ||||| || ||||| || | Sbjct 30343 CCTCTCCAACTCTTTTCAACTCTGGAACATGCCGGCCACAAATGTCGTCGTGCTTCCTGC 30284 Query 363617 TAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTA 363676 | | |||| || || || || ||| |||| |||||| || || | || || |||| Sbjct 30283 TCACGATGAGTGATGACTCGATTCTGGGAATCTATGACACGCTAAAACAATGCGCCCTTA 30224 Query 363677 TTTCCAAGAATGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGC-ACAGAACAG 363734 | || |||| ||||| ||||| ||| | | || | ||||| ||||||| || | | | Sbjct 30223 TATCGAAGAGCGCAGGTGGAATCGGTCTCAACG-TGCACAAGATTCGTGCCACCGGATCG 30165 Query 363735 TTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGA 363794 | ||| ||||| ||| ||||| || ||| |||| |||||||| || | | Sbjct 30164 GTG-ATTGCTGGCACCAACGGAACGTCGAACGGACTGATTCCGATGCTTCGCGTCTACAA 30106 Query 363795 CAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTA 363854 ||| ||||| | |||||||| |||||||| |||||| || ||||| || || || Sbjct 30105 CAACACTGCTCGTTACGTCGATCAGGGTGGCAACAAGCGCCCGGGAGCGTTCGCCATCTA 30046 Query 363855 TCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAA- 363913 || ||||| || ||||||||||| |||||| || ||||| |||||||| ||| Sbjct 30045 CCTGGAGCCGTGGCACGCCGATATTTTCGAGTTTGTTTCACTCCGCAAAAACACTGGACC 29986 Query 363914 --AAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTAT 363971 ||||||| |||||| ||||||||||| ||||| ||||| | || || || Sbjct 29985 CGAAGAGGA---GCGTGCTCGTGATCTGTTTCTGGCACTCTGGGTGCCAGATTTGTTCAT 29929 Query 363972 GAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCT 364031 ||| || || || | | || ||||||| | | ||||| ||| || ||||| || Sbjct 29928 GAAACGTGTCGAAAAGGATCAGGATTGGTCTTTGATGTGCCCGTGCGAGTGCCCAGGGCT 29869 Query 364032 TTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTA 364076 | ||| ||||| || || | | |||| |||| ||||| Sbjct 29868 TGATGATTGCTGGGGAGAAGAGTTCGAAACTCTTTACGCCAAGTA 29824 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303039370814894