Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq17868 123 2e-23 seq17886 82.4 7e-11 >seq17868 Length=20976 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| || || |||||| |||| ||| |||| || |||||| | Sbjct 5976 ATGCAAATTTTCGTCAAAACTTTGACCGGAAAAACGATCACCCTCGAGGTTGAGGCCTCC 6035 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || ||||| ||||| ||||| || ||||| ||||| Sbjct 6036 GACACCATCGAAAATGTTAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCAGATCAG 6095 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||||| || | || ||| ||||| ||||| |||| | | | || |||||||||| Sbjct 6096 CAAAGACTCATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACCCTCTCCGATTATAAC 6155 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 || || || || || || | || | ||| | | | ||||||||| Sbjct 6156 ATCCAGAAGGAGTCAACTCTCCACCTTGTGCTCCGTCTCAGAGGAGGA 6203 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || || || |||||||||||| | || ||| | || ||||| || Sbjct 8122 AATGCAAATCTTCGTCAAGACTTTAACTGGAAAAACTATCACCCTTGAGGTCGAAGCATC 8181 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||||||| | ||||| ||||| ||||| || || || || || ||||| Sbjct 8182 CGACACCATCGAAAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATTCCCCCAGATCA 8241 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | |||| | || || ||||| ||||| |||| | | | | || ||| || || Sbjct 8242 GCAGCGTTTGATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGTACCCTCTCCGACTACAA 8301 Query 24170 CATTCAAAAAGAATCTACAATTCA 24193 ||| ||||||||||| || |||| Sbjct 8302 CATCCAAAAAGAATCCACTCTTCA 8325 Score = 104 bits (114), Expect = 2e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || || || ||||| | || || | || ||||||||| Sbjct 6887 AATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATCACGCTTGAGGTCGAGGCCTC 6946 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||| ||||| | |||||| || || |||||||| || || || || || || Sbjct 6947 CGACACTATCGAAAATGTCAAAGCCAAAATCCAAGACAAAGAGGGAATCCCACCAGACCA 7006 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| |||||||| | || ||| |||||| | ||||||| | | | | || || || Sbjct 7007 ACAAAGACTGATCTTCGCCGGAAAGCAATTGGAAGATGGTCGCACCCTGTCGGACTACAA 7066 Query 24170 CATTCAAAAAGAATCTACAATTCAT 24194 ||||||||| || || ||| | ||| Sbjct 7067 CATTCAAAAGGAGTCGACACTCCAT 7091 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | || || || || | || ||||| | || ||| |||| || |||||| Sbjct 6203 AATGCAGATCTTCGTGAAGACCCTCACAGGAAAGACCATCACCCTCGAGGTTGAGGCCTC 6262 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||||||| || | ||||| ||||| ||||||||||| || || || ||||| Sbjct 6263 CGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCACCAGATCA 6322 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||| | || || | || ||||||||| ||||| || | | | | || ||| || || Sbjct 6323 GCAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCCGACTACAA 6382 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| || || || || ||| | || | ||| | || | ||||||||| Sbjct 6383 CATCCAGAAGGAGTCGACACTCCACCTCGTGCTCCGACTTAGAGGAGGA 6431 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| || || || || ||||| | || || | || ||||| ||| Sbjct 7391 AATGCAAATTTTTGTGAAGACTTTGACCGGAAAGACCATCACGCTTGAGGTCGAAGCCTC 7450 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 |||||||||||| | ||||| ||||| ||||| ||||| || || || ||||| Sbjct 7451 CGACACCATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGATCA 7510 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || |||||||| | || ||| || || ||||| || | | | || ||| || || Sbjct 7511 GCAAAGACTGATCTTCGCCGGAAAACAGCTCGAGGACGGTCGCACTCTCTCCGACTACAA 7570 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||| || || || || || | || | ||| | | | ||||||||| Sbjct 7571 CATCCAGAAGGAGTCAACTCTCCACCTTGTGCTCCGTCTCAGAGGAGGA 7619 Score = 87.8 bits (96), Expect = 2e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | || || || || | |||||||| | || || | ||||| ||||| Sbjct 6659 AATGCAAATTTTCGTGAAGACCCTCACTGGAAAGACTATCACTTTGGAAGTTGAGGCATC 6718 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| ||||| | ||||| ||||| ||||| ||||| || || || || || Sbjct 6719 AGACACTATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGACCA 6778 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 ||||||||||| | || ||| ||||| || || |||| | | | || || ||||| Sbjct 6779 GCAGAGACTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACCCTCTCGGACTATAA 6838 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTG 24200 ||| || ||||| || || | ||| | ||| Sbjct 6839 CATCCAGAAAGAGTCAACTCTCCATCTTGTG 6869 >seq17886 Length=112081 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || | || || || | |||||| |||||||||||||| | Sbjct 4970 ATGCAAATCTTCGTCAAGACTCTGACGGGTAAGACAATTACCCTCGAAGTCGAGGCCTCC 4911 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||||||| | ||||| ||||| ||||| ||||| || || || ||||| Sbjct 4910 GATACCATCGAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGAATCCCACCAGATCAG 4851 Query 24111 CAGAGACTGATTTACGGCGG 24130 || ||| |||| | || ||| Sbjct 4850 CAAAGATTGATCTTCGCCGG 4831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429837401836635