Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq17868 122 8e-23 seq17886 93.3 4e-14 >seq17868 Length=20976 Score = 122 bits (134), Expect = 8e-23 Identities = 156/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || ||||| | || | ||||||||||| || |||||||| ||| | ||||| | Sbjct 6418 CGGAGCACGAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCG 6359 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| ||||||||||| ||| |||| | |||||||| || || || |||||||||||| Sbjct 6358 TCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGATCTGGTGGAATTCCTTCTTTG 6299 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||||| | || | || |||| || ||| | |||| ||| | | Sbjct 6298 TCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAGGCCTCAACCTCGAGGGTGATG 6239 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || || || || || || ||||| |||||||| Sbjct 6238 GTCTTTCCTGTGAGGGTCTTCACGAAGATCTGCAT 6204 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || | ||| | ||||||||||||||||||||||| || | Sbjct 7114 CCTCCTCGGAGACGGAGAACGAGATGGAGTGTCGACTCCTTTTGAATGTTGTAGTCCGAC 7055 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || | ||||| || ||| |||| | | || ||||| || ||| Sbjct 7054 AGGGTGCGACCATCTTCCAATTGCTTTCCGGCGAAGATCAGTCTTTGTTGGTCTGGTGGG 6995 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| |||||||| |||||| |||| | || | ||| |||| || ||||| Sbjct 6994 ATTCCCTCTTTGTCTTGGATTTTGGCTTTGACATTTTCGATAGTGTCGGAGGCCTCGACC 6935 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| | ||| || || || || ||||| Sbjct 6934 TCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 6888 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| ||||| | || | || || || ||||| |||||||| ||| Sbjct 8349 CCTCCACGAAGACGGAGCACAAGGTGAAGAGTGGATTCTTTTTGGATGTTGTAGTCGGAG 8290 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| |||||||| || ||| |||| ||||||||||| || || || Sbjct 8289 AGGGTACGGCCATCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGA 8230 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||||| | || | || |||| | |||| Sbjct 8229 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCGATGGTGTCGGATGCTTCGACC 8170 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||||| || |||| ||| || ||||| || ||||| Sbjct 8169 TCAAGGGTGATAGTTTTTCCAGTTAAAGTCTTGACGAAGATTTGCAT 8123 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 || || || || || | || || ||||||||||| ||||| ||| || ||||| Sbjct 6646 CGGAGAACCAAGTGAAGTGTGGATTCCTTTTGAATATTGTAGTCGGACAATGTGCGTCCA 6587 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 || || |||||||| || || |||| | | |||||||| || ||||||||||| ||| Sbjct 6586 TCTTCCAGCTGCTTTCCGGCAAAGATCAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTG 6527 Query 131140 TCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 || ||| ||| ||| || | | ||| | || |||| || |||| || | || | Sbjct 6526 TC-TTGAATTTTTGCTTTCACGTTCTCAATTGTGTCGGAGGCTTCGACTTCCAATGTGAT 6468 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || || ||||| | ||| || ||||| |||||||| Sbjct 6467 CGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 6432 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | ||| ||||| | ||| | || ||||| || || ||||| || || Sbjct 6886 CCTCCGCGGAGACGGAGCACAAGATGGAGAGTTGACTCTTTCTGGATGTTATAGTCCGAG 6827 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| |||||||| || ||| |||| | | ||||||||| || ||| Sbjct 6826 AGGGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCTGGTGGG 6767 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| ||| || ||||| | || | ||| || | | ||| | Sbjct 6766 ATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCGATAGTGTCTGATGCCTCAACT 6707 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | || || || || || || || |||||||| ||||| Sbjct 6706 TCCAAAGTGATAGTCTTTCCAGTGAGGGTCTTCACGAAAATTTGCAT 6660 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 131019 ACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGA 131078 ||| ||||| | || | || |||||||| || |||||||| ||| | ||||| Sbjct 7607 ACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACC 7548 Query 131079 GTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTT 131138 |||||| ||||| || || ||| |||| | | ||||| || || ||||||||||| || Sbjct 7547 GTCCTCGAGCTGTTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGGATTCCTTCCTT 7488 Query 131139 GTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAAC 131198 ||| ||| || ||||| | || | || |||| || |||| || | || | Sbjct 7487 GTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCGGAGGCTTCGACCTCAAGCGTGAT 7428 Query 131199 GGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 ||| || ||||| | ||| || || ||||| ||||| Sbjct 7427 GGTCTTTCCGGTCAAAGTCTTCACAAAAATTTGCAT 7392 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCT 131097 ||||||||||| || |||||||| || | ||||| ||||| ||||| || || Sbjct 7816 GTCGACTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGGCCATCCTCAAGCTGTTTTCCG 7757 Query 131098 GCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTG 131157 ||| | || | | ||||||||| || ||||| || || ||||| ||| || ||| Sbjct 7756 GCGAAAATAAGTCTCTGCTGGTCTGGCGGGATACCCTCCTTGTCTTGGATCTTGGCCTTC 7697 Query 131158 AGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTT 131217 | | || | || |||| || |||| || | ||| | ||| || ||||| || || Sbjct 7696 ACATTTTCGATTGTGTCGGAGGCTTCGACTTCAAGGGTGATGGTCTTTCCGGTGAGGGTC 7637 Query 131218 TTTACGAAAATCTGCAT 131234 || ||||| |||||||| Sbjct 7636 TTCACGAAGATCTGCAT 7620 >seq17886 Length=112081 Score = 93.3 bits (102), Expect = 4e-14 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 131095 CCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGC 131154 || ||| |||| || | ||||| || || ||||||||||| ||||| ||| || | Sbjct 4831 CCGGCGAAGATCAATCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTAGCC 4890 Query 131155 TTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGA 131214 |||| | ||| | ||||||| || ||||| |||| ||||| || ||||| || ||| Sbjct 4891 TTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATTGTCTTACCCGTCAGA 4950 Query 131215 GTTTTTACGAAAATCTGCATGACT 131238 || || ||||| || ||||||||| Sbjct 4951 GTCTTGACGAAGATTTGCATGACT 4974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471901776689280