Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq18085 230 3e-55 seq17418 118 1e-21 >seq18085 Length=168442 Score = 230 bits (254), Expect = 3e-55 Identities = 486/722 (67%), Gaps = 10/722 (1%) Strand=Plus/Plus Query 62992 TTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCCGGACACATCAACGA 63051 ||||||||| |||||||| || || || || || || || ||| |||||||| || Sbjct 29841 TTCGAACTCTTCTCCCCAGCAATCATCAAGCCCTGGGCACTCGCACGGGCACATCAAAGA 29900 Query 63052 CCACTCTCCGTCATCCTTC---ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 63108 ||| || | |||||| || |||||||| || | ||| || | ||| || || | Sbjct 29901 CCAATCC---TGATCCTTTTCGACACGTTTCATGAACAAATCTGGCACCCAGAGTGCCAG 29957 Query 63109 AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGC 63168 ||| ||||| | | | | || ||| ||| || || || || | ||| | Sbjct 29958 AAACAGATCACGAGCACGCTCCTCTTCGGGTCCAGTGTTTTTGCGGAGTGAAACAAACTC 30017 Query 63169 CATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCC 63228 | |||||| | |||||||| |||| ||| ||||| | |||| || || ||||| || Sbjct 30018 GAAAATATCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGCTCCCGGGCGCTTGTTGCC 30077 Query 63229 TCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATT 63288 |||||||| | ||| | ||| ||||| || || || | | ||| ||||| | || || Sbjct 30078 ACCCTGATCGACGTAACGAGCAGTGTTGTTGTAGACGCGAAGCATCGGAATCAGTCCGTT 30137 Query 63289 GGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAA--TTGAT 63346 || || || ||||| || | || ||| |||||||||| || | |||| Sbjct 30138 CGACGTTCCGTTGGTGCCAGCAATCACCGATCCGGTGGCACGAATCTTGTGCACGTTGA- 30196 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 |||| ||||| ||||| | || || || | |||||| |||||| ||| |||||||| Sbjct 30197 -GACCGATTCCACCTGCGCTCTTCGATATAAGGGCGCATTGTTTTAGCGTGTCATAGATT 30255 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTA 63466 ||| || ||||| |||| | || || || || |||||||| | || | Sbjct 30256 CCCAGAATCGAGTCATCACTCATCGTGAGCAGGAAGCACGACGACATTTGTGGCCGGCAT 30315 Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| | || || | || ||||| ||||| || | | ||| || | | |||| Sbjct 30316 GTTCCAGAGTTGAAAAGAGTTGGAGAGGCGTGCGTCATGAACCGTTCCGACATCAAATTG 30375 Query 63527 TACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAAC 63586 ||||| || || ||||| | ||||| | || ||||| | ||||||||||| ||| Sbjct 30376 TACGTTTCGATGGCTGAAGCGATATCTTCTCCGTGTATTCCGATGGCGACACGCATCAAC 30435 Query 63587 ATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAA 63646 || |||||||| | ||| || |||| |||||||| || | | |||||| || | Sbjct 30436 ATCTGCTGAGGACGTTCGACAATCTCCTTGTTTATCTTGAGAAGGTAGGAACGCTCAAGC 30495 Query 63647 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGT 63706 ||||| || || || || |||| || |||| || ||||| | ||| | ||||||||| Sbjct 30496 GTTTTGAAGCCGAAGAAGGTGTACGAGTAGTCGCGGTCGTAGACAATCGCTGAGTTGAGT 30555 Query 63707 TT 63708 || Sbjct 30556 TT 30557 Score = 118 bits (130), Expect = 1e-21 Identities = 294/441 (67%), Gaps = 13/441 (3%) Strand=Plus/Plus Query 61871 GCGGGTTTCGTACGTAGATAGTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAA 61930 || || ||||| || | ||||||||||||||| || || || ||||||||||||| Sbjct 27189 GCCGGCTTCGTGCGCAAATAGTACATTCCCGTCTTGAGTCCCTTCTTCCATCCGTAAAAG 27248 Query 61931 TGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATATTCATAGATTGACTT 61990 ||||| || | ||| || || || | || ||||| || |||| || || | Sbjct 27249 TGCATCGAGGTGATGGTGGCGTAGCTAGGCTTGGCCATATGAATGTTCAACGACTGCGAT 27308 Query 61991 TGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCC 62050 ||||| ||| ||||||| | ||| || ||||| | |||||| |||||||||||| ||| Sbjct 27309 TGATCAATGTAGGCTCCACGGTCCGCCGCCATCTCGATAATCTCCTTTTGTGGAATCTCC 27368 Query 62051 CAAATAGTTTTATA-AACTCGCTTAATATCTTCTGGAAGGTT-------TGTATTCTGAA 62102 || | ||| || | ||| || | ||| |||| || ||| || || | Sbjct 27369 CACACAGTGCGGTACAGCTC-CTGGAGATCGGTCGGAA--TTCCCTCAATGTCTT-TG-A 27423 Query 62103 TGGATCCACCATCTGCCATAATCCTATTCTTGATCTCATCATTCCATAATTTTCTCTCGG 62162 ||||||| | || || | | ||||| |||||||| ||||| ||| | ||| Sbjct 27424 TGGATCCGTTGTTGGCAATCAGACGGTTCTTCATCTCATCGTTCCACAATCCACGCTCCA 27483 Query 62163 TTAAAACTCTAAGGAGATGCGGATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAG 62222 || | | || | || || || || | || || || || || | || | |||| Sbjct 27484 CCAAGTCCTTGAGCATGTGTGGGTTGACAATCTGGAAGTCACCGGAGAGCACACGACGAG 27543 Query 62223 TGTAAATATTACTGGTATACGGTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTG 62282 ||| || || ||| ||||| || | |||||||| ||||| | || || ||||| | Sbjct 27544 AGTAGATGTTTGAGGTGTACGGCTCGATCGACTCATTGTTTCCGAGTATCTGGGCAGTGG 27603 Query 62283 ATGCAGTCGGCATAGGTGCCA 62303 | || |||||||| || |||| Sbjct 27604 AAGCCGTCGGCATTGGAGCCA 27624 >seq17418 Length=39954 Score = 118 bits (130), Expect = 1e-21 Identities = 134/179 (75%), Gaps = 7/179 (4%) Strand=Plus/Plus Query 32696 AATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATAT 32755 ||| | |||||| ||| ||||| || ||||| || |||||||||||||||||||| || Sbjct 733 AATCAGTTCGTTAGAATGAGTGAGCCCTGGCATGAGCCCACGCTTTTTAAGCCAAAAAAT 792 Query 32756 GGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTC 32815 ||| || || |||||| ||| || |||||||| || || || || || ||||||||||| Sbjct 793 GGAGGCGAAAGATCCACTAAAAAAGATTCCTTCGACAGCAGCGAACGCGATAAGTCTCTC 852 Query 32816 TCCATAACCGGCGCTGTCATGT-----ATCCACTTTTGAGCCCAATCGGCCTTCttttt 32869 | || | |||| || ||| ||||| ||||||| ||||||||||| || Sbjct 853 GGC--AAATGACGCTTTCTTGTCCGAAATCCAACGGAGAGCCCAGTCGGCCTTCTTCTT 909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633482961833200