Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq17868 149 5e-31 >seq17868 Length=20976 Score = 149 bits (164), Expect = 5e-31 Identities = 173/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || |||||||||||||| || | |||||| | ||||| || | || Sbjct 6431 AATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACGATCACATTGGAAGTCGAAGCCTC 6490 Query 25058 TGACACTATCGAGTCACTG-AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || ||| || ||||||||| ||| ||||| ||||| || ||||| |||| Sbjct 6491 CGACACAATTGAGAACGTGAAAGCAAAAATTCA-AGACAAGGAAGGAATCCCACCAGACC 6549 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | || | | || |||||||| || || | ||||||| ||||| || ||| |||| Sbjct 6550 AGCAAAGACTGATCTTTGCCGGAAAGCAGCTGGAAGATGGACGCACATTGTCCGACTACA 6609 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||||||| |||||||| || || || || || | || |||||||||| Sbjct 6610 ATATTCAAAAGGAATCCACACTTCACTTGGTTCTCCGCCTCAGAGGAGGAA 6660 Score = 143 bits (158), Expect = 2e-29 Identities = 176/238 (74%), Gaps = 8/238 (3%) Strand=Plus/Plus Query 24992 CGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGA 25051 |||| ||||||||| ||||| |||||||||||||| || ||||||| | || || || Sbjct 6881 CGGAGGAATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATCACGCTTGAGGTCGA 6940 Query 25052 GTCGTCTGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTC 25107 | | || ||||||||||| |||| |||| |||||| |||||||| || || | Sbjct 6941 GGCCTCCGACACTATCGAAAATGTCA---AAGC-CAAAATCCAAGACAAAGAGGGAATCC 6996 Query 25108 CACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGG 25167 |||| |||||||| | | || || ||||| || ||||| ||||||| |||||| || Sbjct 6997 CACCAGACCAACAAAGACTGATCTTCGCCGGAAAGCAATTGGAAGATGGTCGCACCCTGT 7056 Query 25168 GCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| |||||||| || || || || ||| | || || | || ||||||| Sbjct 7057 CGGACTACAACATTCAAAAGGAGTCGACACTCCATCTCGTTCTCCGTCTCCGAGGAGG 7114 Score = 111 bits (122), Expect = 1e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 24992 CGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGA 25051 |||| ||||||||| ||||| |||||||||||||| || ||||||| | || || || Sbjct 7385 CGGAGGAATGCAAATTTTTGTGAAGACTTTGACCGGAAAGACCATCACGCTTGAGGTCGA 7444 Query 25052 GTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 | || ||||| ||||| | ||| || ||| ||||| ||||| || ||||| Sbjct 7445 AGCCTCCGACACCATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACC 7504 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 || || || | | || || ||||| ||||| | || || | ||||||| | ||| Sbjct 7505 AGATCAGCAAAGACTGATCTTCGCCGGAAAACAGCTCGAGGACGGTCGCACTCTCTCCGA 7564 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 ||||| || || || || || || || || | ||||| | || |||||||||| Sbjct 7565 CTACAACATCCAGAAGGAGTCAACTCTCCACCTTGTGCTCCGTCTCAGAGGAGGAA 7620 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || || ||||||||||| ||| | ||||| |||| || ||| | || Sbjct 5976 ATGCAAATTTTCGTCAAAACTTTGACCGGAAAAACGATCACCCTCGAGGTTGAGGCCTCC 6035 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| || ||| ||||| ||||| ||||| || || || Sbjct 6036 GACACCATCGAAAATGTTAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCAGATCAG 6095 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 || | | || || ||||| || || | || |||| |||||| | |||||| || Sbjct 6096 CAAAGACTCATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACCCTCTCCGATTATAAC 6155 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || || || || || || | ||||| | || |||||||||| Sbjct 6156 ATCCAGAAGGAGTCAACTCTCCACCTTGTGCTCCGTCTCAGAGGAGGAA 6204 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || ||||| | || || || ||||||| |||| || ||| | || Sbjct 6203 AATGCAGATCTTCGTGAAGACCCTCACAGGAAAGACCATCACCCTCGAGGTTGAGGCCTC 6262 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| || || | ||| || ||| ||||||||||| |||||||| || || Sbjct 6263 CGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCACCAGATCA 6322 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||||| |||| || |||||||| || | || || | ||||| | ||| ||||| Sbjct 6323 GCAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCCGACTACAA 6382 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || || || || || || || | ||||| | || |||||||||| Sbjct 6383 CATCCAGAAGGAGTCGACACTCCACCTCGTGCTCCGACTTAGAGGAGGAA 6432 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| || || ||||| | || || || | ||||| | ||||| ||| | || Sbjct 6659 AATGCAAATTTTCGTGAAGACCCTCACTGGAAAGACTATCACTTTGGAAGTTGAGGCATC 6718 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||||| | ||| || ||| ||||| ||||| || ||||| ||||| Sbjct 6719 AGACACTATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGACCA 6778 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| | | || || ||||| || || | || |||| |||||| | || || || Sbjct 6779 GCAGAGACTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACCCTCTCGGACTATAA 6838 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || ||||| || || || ||| | ||||| | || | ||||||| Sbjct 6839 CATCCAGAAAGAGTCAACTCTCCATCTTGTGCTCCGTCTCCGCGGAGGAA 6888 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 24992 CGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGA 25051 |||| ||||||||| || || |||||||| || || ||| | ||||| | || || || Sbjct 8116 CGGAGGAATGCAAATCTTCGTCAAGACTTTAACTGGAAAAACTATCACCCTTGAGGTCGA 8175 Query 25052 GTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACC 25111 | || ||||| ||||| | ||| || ||| ||||| || || ||||| || Sbjct 8176 AGCATCCGACACCATCGAAAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATTCCCCC 8235 Query 25112 TGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGA 25171 || || ||||| | || || || || || || | || |||| || || | ||| Sbjct 8236 AGATCAGCAGCGTTTGATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGTACCCTCTCCGA 8295 Query 25172 TTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAAAT 25229 ||||| || |||||||||||||| || || | ||||| | || | |||||| || Sbjct 8296 CTACAACATCCAAAAAGAATCCACTCTTCACCTTGTGCTCCGTCTTCGTGGAGGAGAT 8353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433228623941855