Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq17418 107 2e-18 >seq17418 Length=39954 Score = 107 bits (118), Expect = 2e-18 Identities = 150/208 (72%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 93475 TACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCCAATATATGCTTTAT 93534 ||| | ||| |||||||| || |||||||| || || ||||| || | | | || Sbjct 1123 TACCAAATTCTCATTGACGATTCCATCGGAAGCAGCGAAAAAGGCGAGAACTCGTGAGAT 1182 Query 93535 AAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCTTTTGAAAGATCGAC 93594 ||| | || ||||||| | || | ||| |||||||| | |||||| |||||||| Sbjct 1183 AAAGTATTGCTCATCACCATTCATCTTCTCCCAATCATTCATATCTTTGCCCAGATCGAC 1242 Query 93595 TTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTACATATCCCATATGTCTTGAT- 93653 ||| ||||| ||||| || || ||| |||| |||||||| | ||||| || | |||| Sbjct 1243 TTCCTCGACCGTCCAGAATGACGCTACTGCCTTTTTGTAGAATTCCCAGATTTGGTGATG 1302 Query 93654 ATTGAATTGGAAATATGACAAAACGATT 93681 || || ||||| || ||||| ||||| Sbjct 1303 CTTCAACGGGAAA-ATCACAAAGCGATT 1329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556729819379080