Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq17868 143 2e-29 seq18085 93.3 4e-14 >seq17868 Length=20976 Score = 143 bits (158), Expect = 2e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || || |||||||| || ||||| |||| ||||| || ||| | || Sbjct 8123 ATGCAAATCTTCGTCAAGACTTTAACTGGAAAAACTATCACCCTTGAGGTCGAAGCATCC 8182 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || |||||||||||||| ||||| || ||||| Sbjct 8183 GACACCATCGAAAACGTCAAGGCCAAGATCCAAGACAAGGAGGGAATTCCCCCAGATCAG 8242 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || || ||| | |||||| ||| ||| ||||||| |||||| Sbjct 8243 CAGCGTTTGATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGTACCCTCTCCGACTACAAC 8302 Query 22399 ATTCAAAAAGAATCCAC 22415 || |||||||||||||| Sbjct 8303 ATCCAAAAAGAATCCAC 8319 Score = 136 bits (150), Expect = 3e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || ||||| ||||| || || |||| ||||| || || || || Sbjct 6888 ATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATCACGCTTGAGGTCGAGGCCTCC 6947 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || ||||| ||||| |||||||| ||||| || ||||| || ||| Sbjct 6948 GACACTATCGAAAATGTCAAAGCCAAAATCCAAGACAAAGAGGGAATCCCACCAGACCAA 7007 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || || ||||| || || || || ||| |||||| | || || |||||| Sbjct 7008 CAAAGACTGATCTTCGCCGGAAAGCAATTGGAAGATGGTCGCACCCTGTCGGACTACAAC 7067 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| || || || | ||| | ||| | || | || |||||| Sbjct 7068 ATTCAAAAGGAGTCGACACTCCATCTCGTTCTCCGTCTCCGAGGAGGT 7115 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || |||||||| ||||| |||||| |||| || || || || || || Sbjct 5976 ATGCAAATTTTCGTCAAAACTTTGACCGGAAAAACGATCACCCTCGAGGTTGAGGCCTCC 6035 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || || |||||||| || ||||| || ||||| Sbjct 6036 GACACCATCGAAAATGTTAAGGCCAAGATCCAGGACAAGGAAGGAATTCCTCCAGATCAG 6095 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || || ||||| || ||| | |||||| |||||| |||||||||| ||| Sbjct 6096 CAAAGACTCATCTTCGCCGGAAAGCAGCTCGAGGATGGTCGCACCCTCTCCGATTATAAC 6155 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 6156 ATCCAGAAGGAGTCAAC 6172 Score = 131 bits (144), Expect = 1e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||||| ||||| || ||| |||| | ||||| ||| || || Sbjct 6432 ATGCAGATCTTCGTCAAGACTTTGACCGGAAAGACGATCACATTGGAAGTCGAAGCCTCC 6491 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | ||| |||||||||||||||||| || || ||||| || || Sbjct 6492 GACACAATTGAGAACGTGAAAGCAAAAATTCAAGACAAGGAAGGAATCCCACCAGACCAG 6551 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || |||||||| || ||| | || ||| ||||| | ||||| ||||| Sbjct 6552 CAAAGACTGATCTTTGCCGGAAAGCAGCTGGAAGATGGACGCACATTGTCCGACTACAAT 6611 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 |||||||| |||||||| | || || ||| Sbjct 6612 ATTCAAAAGGAATCCACACTTCACTTGGTT 6641 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||||||||| || ||||| ||||| || || |||| ||||| || ||| || || Sbjct 7392 ATGCAAATTTTTGTGAAGACTTTGACCGGAAAGACCATCACGCTTGAGGTCGAAGCCTCC 7451 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || |||| || || || |||||||| || || ||||| ||||| Sbjct 7452 GACACCATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGATCAG 7511 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | || || || ||||| |||||| | ||||| ||||| ||||||| |||||| Sbjct 7512 CAAAGACTGATCTTCGCCGGAAAACAGCTCGAGGACGGTCGCACTCTCTCCGACTACAAC 7571 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 7572 ATCCAGAAGGAGTCAAC 7588 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | ||||| || || |||| |||||||| ||| || || Sbjct 7620 ATGCAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTTGAAGTCGAAGCCTCC 7679 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || || || ||||||||||||||||| || || || || Sbjct 7680 GACACAATCGAAAATGTGAAGGCCAAGATCCAAGACAAGGAGGGTATCCCGCCAGACCAG 7739 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| || ||||| |||||| | |||||| |||||| |||| || |||||| Sbjct 7740 CAGAGACTTATTTTCGCCGGAAAACAGCTTGAGGATGGCCGCACGCTCTCTGACTACAAC 7799 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || || || || | || | ||| | || | || |||||| Sbjct 7800 ATCCAGAAGGAGTCGACACTCCACCTTGTTCTCCGTCTCCGTGGAGGT 7847 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || | || || || || ||||| | ||||| || | | Sbjct 6660 ATGCAAATTTTCGTGAAGACCCTCACTGGAAAGACTATCACTTTGGAAGTTGAGGCATCA 6719 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||| || || || |||||||| || || ||||| || || Sbjct 6720 GACACTATCGAAAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGACCAG 6779 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | || || || ||||| || ||| | |||||| |||||| |||| || || ||| Sbjct 6780 CAGAGACTGATCTTCGCCGGAAAGCAGCTTGAGGATGGTCGCACCCTCTCGGACTATAAC 6839 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || ||||| || || | ||| | || | || | |||||||| Sbjct 6840 ATCCAGAAAGAGTCAACTCTCCATCTTGTGCTCCGTCTCCGCGGAGG 6886 Score = 86.0 bits (94), Expect = 5e-12 Identities = 103/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || ||| | || || ||||| ||||||| ||||| || | | Sbjct 7116 ATGCAGATCTTCGTCAAGACTCTCACTGGAAAAACCATCACTCTCGAAGTTGAGGCATCG 7175 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || ||||| || ||||||||||||||||| || || || ||||| Sbjct 7176 GACACCATTGAGAATGTCAAAGCCAAGATTCAAGACAAGGAGGGAATCCCGCCAGATCAG 7235 Query 22339 CAACGTCTTATATTTGCCGG 22358 || | ||||| |||||||| Sbjct 7236 CAGAGACTTATCTTTGCCGG 7255 >seq18085 Length=168442 Score = 93.3 bits (102), Expect = 4e-14 Identities = 320/494 (65%), Gaps = 4/494 (1%) Strand=Plus/Plus Query 128779 TTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCT 128838 ||||| || || || | || ||||| | |||||||| ||||||||||||||||| || Sbjct 27159 TTGTCGACAGTGAACTGAACAGCGTTGACGGCCGGCTTCGTGCGCAAATAGTACATTCCC 27218 Query 128839 GTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGT-GGG 128897 || || | || | ||||| || | ||| |||| ||| | |||||| | || Sbjct 27219 GTCTTGAGTCCCTTCTTCCATCCGTAAAAGTGCATCGAGGTGATGGTGGCGTAGCTAGGC 27278 Query 128898 TTGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGC 128957 ||| | || | ||| || || || || ||||||||| ||| || || || || || Sbjct 27279 TTGGC-CATATGAATGTTCAACGACTGCGATTGATCAATGTAGGCTCCACGGTCCGCCGC 27337 Query 128958 CATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTG 129017 ||| | || | | || | || |||||||| || ||| ||||| | | Sbjct 27338 CATCTCGATAATCTCCTTTTGTGGAATCTCCCACACAGTGCGGTACAGCTCCTGGAGATC 27397 Query 129018 TTTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCAT 129077 | || ||| | ||||||| | | | |||||||| ||||| | ||| ||| Sbjct 27398 GGTCGGAATTCCCTCAATGTCTTTGATGGATCCGTTGTTGGCAATCAGACGGTTCTTCAT 27457 Query 129078 CTGTTCGTTGTACAAATTCA-GTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTACTT 129136 || ||||| || ||| || | | | ||| || | | || || | ||| | | | Sbjct 27458 CTCATCGTTCCAC-AATCCACGCTCCACCAAGTCCTTGAGCATGTGTGGGTTGACAATCT 27516 Query 129137 GAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATT 129196 | |||||||| | | || || ||| ||| ||||| |||| ||||||| | ||| | Sbjct 27517 GGAAGTCACCGGAGAGCACACGACGAGAGTAGATGTTTGAGGTGTACGGCTCGATCGACT 27576 Query 129197 CATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGCGAGT 129256 ||||||| || | ||| || || || | || || ||||| ||||| | ||| || Sbjct 27577 CATTGTTTCCGAGTATCTGGGCAGTGGAAGCCGTCGGCATTGGAGCCATGAGAAGACTGT 27636 Query 129257 TTCGCAAACCGTGC 129270 | || | |||||| Sbjct 27637 TGCGGATTCCGTGC 27650 Score = 87.8 bits (96), Expect = 2e-12 Identities = 279/427 (65%), Gaps = 17/427 (4%) Strand=Plus/Plus Query 129984 CGGACACATCAAACTCCACATTCC-ATCCGCTTCGACTCGTTTCATAAACAAATCGGGTA 130042 ||| ||||||||| ||| || | |||| |||||| |||||||| |||||||| || | Sbjct 29886 CGGGCACATCAAAGACCA-ATCCTGATCCTTTTCGACACGTTTCATGAACAAATCTGGCA 29944 Query 130043 CCCACAGGGCGTACAACAAATCTCG----CGCTTTTCTATCCTCGGCACCCATGTTACGT 130098 |||| || || |||| ||| || |||| ||| |||| || |||| | Sbjct 29945 CCCAGAGTGCCAGAAACAGATCACGAGCACGCTCCTCT----TCGGGTCCAGTGTTT--T 29998 Query 130099 TTC--AGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAATTGCCATTG 130156 | | ||| || || ||| |||| |||||||||||||| || | || || || | | Sbjct 29999 TGCGGAGTGAAACAAACTCGAAAATATCGGCGTGCCACGGCTCCAGGTAGATGGCGAACG 30058 Query 130157 CGCCCTTCCGTTTG---CCCCCTTGGTCAACGTGGCGCACGGCATTGTTGTAGACTCGCA 130213 | ||| || ||| || || || || |||| || | | ||||||||||| || | Sbjct 30059 CTCCCGGGCGCTTGTTGCCACCCTGATCGACGTAACGAGCAGTGTTGTTGTAGACGCGAA 30118 Query 130214 ACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGCCACGAGCCC 130273 ||| | || |||||| | ||| ||||| |||| |||| | || || | Sbjct 30119 GCATCGGAATCAGTCCGTTCGACGTTCCGTTGGTGCCAGCAATCACCGATCCGGTGGCAC 30178 Query 130274 GAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACGCGCAATCGC 130333 ||| || || ||| | ||||| || || || | || ||||| | ||||| | Sbjct 30179 GAATCTTGTGCACGTTGAGACCGATTCCACCTGCGCTCTTCGATATAAGGGCGCATTGTT 30238 Query 130334 GTAGCGTTTCATAAATGCCAACGATACTGTCTTCTTTAATGTTTAGGAGGAAACACGAGG 130393 |||||| ||||| || || | || ||| || | || | || ||||| ||||| | Sbjct 30239 TTAGCGTGTCATAGATTCCCAGAATCGAGTCATCACTCATCGTGAGCAGGAAGCACGACG 30298 Query 130394 CCAATTG 130400 || ||| Sbjct 30299 ACATTTG 30305 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419631742859605