Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq18085 120 6e-22 >seq18085 Length=168442 Score = 120 bits (132), Expect = 6e-22 Identities = 361/547 (66%), Gaps = 23/547 (4%) Strand=Plus/Plus Query 244298 CCCCACATGTCAAACTGCAGCAGCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAG 244357 ||||||||||| || || || | ||||| || || || || || |||| ||| Sbjct 28837 CCCCACATGTCGAATTGGAGTTGTCCCTTCGAAACCGGAGATCCTTCATATGTCGAGTAT 28896 Query 244358 GGACCGTCGCGCTG-GGCCAGCTTACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTC 244416 || || || ||| |||| || || || | ||| || || | |||||| ||| Sbjct 28897 GGTCC-AAGCTCTGCAGCCAACTCGCAACTGGCAGTGAGAGCCGCATGGTAGATCACCTC 28955 Query 244417 GAAGATCATCTTGTTCATGTCGCGGGCCT-TGCCGCAGGTGAAGGGGATGCCCATCATCA 244475 ||||| |||||| | || | ||||| || || ||||||| || || ||| | || Sbjct 28956 AAAGATGCGCTTGTTAAGATCTCTGGCCTGTGGCG-AGGTGAACGGATAGCGCATGAGCA 29014 Query 244476 TGAAGACGTCGGCCAGTCCCTGCACGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAG- 244534 ||||| ||||| || ||||| ||||||| || || || | || ||| |||| ||| Sbjct 29015 TGAAGCAATCGGCGAGACCCTGAACGCCGAGTCCAATCGGGCGATGACGCATGTTCGAGT 29074 Query 244535 CGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTG 244594 || | || | | || || || |||| ||||||| | |||||| |||||||| ||| Sbjct 29075 TGCGAGCCTCCTCG-ACCGGATAGTAGTTCACGTCGATGATCTTGTTCAGGTTGCGAGTG 29133 Query 244595 ATCA-TGCGGACGACGTCGGCCAGCAGCTGAAAGTCGTACTCGTAGGGATCCTCGGCGAT 244653 |||| | | | || ||||| ||| | |||||| ||| || || || Sbjct 29134 ATCACTTTTGTC-ACTTCGGCGAGCTTCACAAAGTCAAACT--------TCTTC-TCGTG 29183 Query 244654 GGTGATCCTCACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTC 244713 |||| |||||| ||| | || | ||| || |||||||| || | ||| || Sbjct 29184 GGTG------ACAAACCGGTTCAACGCAATAGAGGCAAGATTGCAGACAGCGATCTCATC 29237 Query 244714 CGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTG 244773 || | ||||| | ||||||||||| | || ||| |||||||| || |||| Sbjct 29238 CGGAGCAGAGTACTCTATGATCTCGGTGCACAAATTCGAGCATTTGATGGTTCCAAGGTT 29297 Query 244774 CTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTC 244833 ||| || || || || ||| ||||||| |||||| ||| |||| |||||||| Sbjct 29298 CTGCTGGTTTGATTTTCTGTTAGAGGCGTCTTTGTAGGTTATGTAGGGAAGTCCGGTCTC 29357 Query 244834 GAGCTGG 244840 | |||| Sbjct 29358 AATCTGG 29364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944117079615920