Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq17868 150 4e-31 seq17815 96.9 8e-15 seq17886 91.5 3e-13 >seq17868 Length=20976 Score = 150 bits (166), Expect = 4e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 || || ||||| | || |||||||| | || || ||||| || || ||||| | Sbjct 7114 CCTCCTCGGAGACGGAGAACGAGATGGAGTGTCGACTCCTTTTGAATGTTGTAGTCCGAC 7055 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || ||||| || ||||| ||||| ||||| ||||||||||| | ||||| |||| Sbjct 7054 AGGGTGCGACCATCTTCCAATTGCTTTCCGGCGAAGATCAGTCTTTGTTGGTCTGGTGGG 6995 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 ||||| ||||| || |||||||| ||||| || ||||| |||| ||| | || || Sbjct 6994 ATTCCCTCTTTGTCTTGGATTTTGGCTTTGACATTTTCGATAGTGTCGGAGGCCTCGACC 6935 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 || |||||||| ||||| ||||||| ||||||||| || || |||||| Sbjct 6934 TCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCATT 6887 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 288271 TGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGT 288330 |||| ||| ||| ||||| ||||| ||||||| | |||||||| ||||| | || Sbjct 6634 TGAAGTGTGGATTCCTTTTGAATATTGTAGTCGGACAATGTGCGTCCATCTTCCAGCTGC 6575 Query 288331 TTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTC 288390 ||||| || |||||||| | || || |||||||||||| || || || ||||| Sbjct 6574 TTTCCGGCAAAGATCAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATTTTT 6515 Query 288391 GCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTC 288450 ||||||||||| || || | ||| | ||| ||||| | ||||||||||| |||||| Sbjct 6514 GCTTTCACGTTCTCAATTGTGTCGGAGGCTTCGACTTCCAATGTGATCGTCTTTCCGGTC 6455 Query 288451 AGAGTCTTGACGAATATCTGCATT 288474 | |||||||||||| ||||||||| Sbjct 6454 AAAGTCTTGACGAAGATCTGCATT 6431 Score = 140 bits (154), Expect = 8e-28 Identities = 146/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| ||| ||||| ||||| || | |||||||| |||||| Sbjct 7582 TCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCGTCCTCGAGCTGTTTTCCGGCGAAG 7523 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 ||||| | || ||| |||||||||||| || |||||||| || || || || ||| Sbjct 7522 ATCAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTT 7463 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | ||| || || |||||||| ||||| ||||||| |||||| || Sbjct 7462 TCGATGGTGTCGGAGGCTTCGACCTCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTCACA 7403 Query 288463 AATATCTGCATT 288474 || || |||||| Sbjct 7402 AAAATTTGCATT 7391 Score = 138 bits (152), Expect = 3e-27 Identities = 179/246 (73%), Gaps = 6/246 (2%) Strand=Plus/Minus Query 288232 ATGATTCATACATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGG 288291 || ||| | | || ||| || || || | || || || |||| ||| |||||||||| Sbjct 8364 ATTATTTACATATCTCCTCCACGAAGACGGAGCACAAGGTGAAGAGTGGATTCTTTTTGG 8305 Query 288292 ATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGC 288351 || || ||||||| ||| || || || || || | || ||||| |||||||||| |||| Sbjct 8304 ATGTTGTAGTCGGAGAGGGTACGGCCATCCTCGAGCTGCTTTCCAGCGAAGATCAAACGC 8245 Query 288352 TGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATA 288408 || ||| |||||| ||||| || || || ||||| || || || |||||||| || Sbjct 8244 TGCTGA---TCTGGGGGAATTCCCTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCGATG 8188 Query 288409 GAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATC 288468 | ||| | ||| || || || ||||| || || || || | |||||||||||| || Sbjct 8187 GTGTCGGATGCTTCGACCTCAAGGGTGATAGTTTTTCCAGTTAAAGTCTTGACGAAGATT 8128 Query 288469 TGCATT 288474 |||||| Sbjct 8127 TGCATT 8122 Score = 134 bits (148), Expect = 3e-26 Identities = 145/192 (76%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| ||||||||| ||||| || | || || || |||||| Sbjct 6394 TCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 6335 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 || || ||||| ||| ||| ||||||||||| |||||||| || || || || ||| Sbjct 6334 ATAAGGCGCTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTT 6275 Query 288403 TCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACG 288462 || || | ||| | || || ||||| ||||| ||||| || || || ||||| ||| Sbjct 6274 TCAATGGTGTCGGAGGCCTCAACCTCGAGGGTGATGGTCTTTCCTGTGAGGGTCTTCACG 6215 Query 288463 AATATCTGCATT 288474 || ||||||||| Sbjct 6214 AAGATCTGCATT 6203 Score = 134 bits (148), Expect = 3e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||| |||||||| | || || ||||| | || ||||| ||||| |||||||| | Sbjct 6887 TCCTCCGCGGAGACGGAGCACAAGATGGAGAGTTGACTCTTTCTGGATGTTATAGTCCGA 6828 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| ||||| || || || | || ||||| ||||||||||| | ||| || ||| Sbjct 6827 GAGGGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCTGGTGG 6768 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 ||||||||| || |||||||| || || || |||||||| |||| || | || || Sbjct 6767 GATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCGATAGTGTCTGATGCCTCAAC 6708 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| | ||||| ||||| || || || ||||| ||||| || |||||| Sbjct 6707 TTCCAAAGTGATAGTCTTTCCAGTGAGGGTCTTCACGAAAATTTGCATT 6659 >seq17815 Length=64061 Score = 96.9 bits (106), Expect = 8e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 326207 TCGCGGACGTTCAATAGTTTTCCACGAAGAGGGAACACTCCATATCTCTCGCGACCGACC 326266 || || ||||||| || ||||||||||| ||||||||||| || | || ||||||||| Sbjct 23402 TCACGAACGTTCAGCAGCTTTCCACGAAGTGGGAACACTCCGTACTTGTCACGACCGACC 23461 Query 326267 ACGGACAGCCCTGCGATTGCAAGTGTCGCTGCGGAATCCCCCTCCGTCAGAATGAGAGTG 326326 || | ||| || | | || |||||| || ||||| ||||| || || ||||| ||| Sbjct 23462 ACAGCCAGACCAGATACCGCCAGTGTCTTGGCCGAATCTCCCTCAGTGAGGATGAGCGTG 23521 Query 326327 CACATTTTGC-TGTTATTCGTTCCAGC 326352 ||| | ||| ||| || |||||||| Sbjct 23522 CAC-TGCTGCGAGTTTTTAGTTCCAGC 23547 >seq17886 Length=112081 Score = 91.5 bits (100), Expect = 3e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 288334 CCTGCGAAGATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCT 288393 || |||||||||| | || ||| |||||||||||| || || ||||| || || Sbjct 4831 CCGGCGAAGATCAATCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTAGCC 4890 Query 288394 TTCACGTTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGA 288453 || || || || || | |||| | || |||||||| || || ||||| || |||||| Sbjct 4891 TTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATTGTCTTACCCGTCAGA 4950 Query 288454 GTCTTGACGAATATCTGCAT 288473 ||||||||||| || ||||| Sbjct 4951 GTCTTGACGAAGATTTGCAT 4970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179369993802926