Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq18085 84.2 3e-11 >seq18085 Length=168442 Score = 84.2 bits (92), Expect = 3e-11 Identities = 165/243 (68%), Gaps = 6/243 (2%) Strand=Plus/Plus Query 115069 ACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCC 115128 ||| || || ||||| | ||| || || | ||||| | | || || | ||||| || Sbjct 30198 ACCGATTCCACCTGCGCTCTTCGATATAAGGGCGCATTGTTTTAGCGTGTCATAGATTCC 30257 Query 115129 GTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGT 115188 ||||||||| | | | | || |||||||| |||||||||||||| ||| Sbjct 30258 CAGAATCGAGTCATCACTCATCGTGAGCAGGAAGCACGACGACATTTGTGGCCGGCATGT 30317 Query 115189 ACCAGCGTTGAAGAGGGTTGGTGTCGCGTG---GATGAACATACCTTGGGACATCTTATC 115245 |||| |||||| || ||||| | ||||| |||||| | || |||||| || Sbjct 30318 TCCAGAGTTGAAAAGAGTTGGAGAGGCGTGCGTCATGAAC---CGTTCCGACATCAAATT 30374 Query 115246 GTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAA 115305 ||| || || | | | | | || ||||| ||||| || ||||| | ||| ||||| || Sbjct 30375 GTACGTTTCGATGGCTGAAGCGATATCTTCTCCGTGTATTCCGATGGCGACACGCATCAA 30434 Query 115306 CAT 115308 ||| Sbjct 30435 CAT 30437 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597213094966360