Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq17868 100 3e-16 seq4951 91.5 2e-13 seq18013 87.8 2e-12 seq18161 84.2 2e-11 seq18150 84.2 2e-11 seq18073 84.2 2e-11 seq17966 84.2 2e-11 seq17906 84.2 2e-11 seq17509 84.2 2e-11 seq17498 84.2 2e-11 seq17121 84.2 2e-11 seq16390 84.2 2e-11 seq6400 84.2 2e-11 seq5552 84.2 2e-11 seq18113 82.4 8e-11 seq17903 82.4 8e-11 seq17539 82.4 8e-11 seq11378 82.4 8e-11 seq11377 82.4 8e-11 seq1043 82.4 8e-11 >seq17868 Length=20976 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 |||||||| | || | ||||| || | |||| ||||||||||||||||| || | | Sbjct 6658 CCTCCTCTGAGGCGGAGAACCAAGTGAAGTGTGGATTCCTTTTGAATATTGTAGTCGGAC 6599 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 | || || | || || |||||||| || || || || |||| |||||||| | ||| Sbjct 6598 AATGTGCGTCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGTCTTTGCTGGTCTGGTGGG 6539 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||||||| | ||| |||||| ||| | || | | |||||| | ||| || Sbjct 6538 ATTCCTTCCTTGT-CTTGAATTTTTGCTTTCACGTTCTCAATTGTGTCGGAGGCTTCGAC 6480 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | ||||| || || || || | ||||| || ||||| |||||| Sbjct 6479 TTCCAATGTGATCGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCATT 6431 Score = 98.7 bits (108), Expect = 1e-15 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||||| | ||| | || | ||| | ||| |||||||||||| ||||| || | Sbjct 7115 ACCTCCTCGGAGACGGAGAACGAGATGGAGTGTCGACTCCTTTTGAATGTTGTAGTCCGA 7056 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||| || || | || || | ||||| || ||||| || |||| || ||||| | ||| Sbjct 7055 CAGGGTGCGACCATCTTCCAATTGCTTTCCGGCGAAGATCAGTCTTTGTTGGTCTGGTGG 6996 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 42160 | | ||| ||||| |||||| ||||| | | | |||||| | || || Sbjct 6995 GATTCCCTCTTTGTCTTGGATTTTGGCTTTGACATTTTCGATAGTGTCGGAGGCCTCGAC 6936 Query 42161 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 || | ||||||||| || || || | ||||| ||||||||||||||| Sbjct 6935 CTCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCATT 6887 >seq4951 Length=152553 Score = 91.5 bits (100), Expect = 2e-13 Identities = 82/103 (80%), Gaps = 4/103 (4%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||||| |||| | ||| |||||| |||||| | ||||||| || |||| Sbjct 118481 AAAAAATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 118540 Query 57058 TCACCACTATACTACCGAGGA----TTGAATATATAACTTGAA 57096 ||||||||||||||||||||| || |||||| ||||| || Sbjct 118541 TCACCACTATACTACCGAGGACACGTTAAATATAGAACTTCAA 118583 >seq18013 Length=292543 Score = 87.8 bits (96), Expect = 2e-12 Identities = 68/81 (84%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||||||||||| |||| | ||| |||||| |||||| | ||||||| || |||| Sbjct 72831 AAAAATTTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 72772 Query 57058 TCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||| Sbjct 72771 TCACCACTATACTACCGAGGA 72751 >seq18161 Length=1087348 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||||| |||| | ||| |||||| |||||| | ||||||| || |||| Sbjct 555913 AAAAAGTTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 555854 Query 57058 TCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||| Sbjct 555853 TCACCACTATACTACCGAGGA 555833 >seq18150 Length=702657 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||||| |||| | ||| |||||| |||||| | ||||||| || |||| Sbjct 566111 AAAAAATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 566052 Query 57058 TCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||| Sbjct 566051 TCACCACTATACTACCGAGGA 566031 >seq18073 Length=421547 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||||| |||| | ||| |||||| |||||| | ||||||| || |||| Sbjct 225086 AAAAAATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 225027 Query 57058 TCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||| Sbjct 225026 TCACCACTATACTACCGAGGA 225006 >seq17966 Length=105623 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||||| |||| | ||| |||||| |||||| | ||||||| || |||| Sbjct 14574 AAAAAATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 14515 Query 57058 TCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||| Sbjct 14514 TCACCACTATACTACCGAGGA 14494 >seq17906 Length=100893 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||||| |||| | ||| |||||| |||||| | ||||||| || |||| Sbjct 30615 AAAAAATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 30556 Query 57058 TCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||| Sbjct 30555 TCACCACTATACTACCGAGGA 30535 >seq17509 Length=86203 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||||| |||| | ||| |||||| |||||| | ||||||| || |||| Sbjct 83292 AAAAAATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 83351 Query 57058 TCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||| Sbjct 83352 TCACCACTATACTACCGAGGA 83372 >seq17498 Length=66090 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||||| |||| | ||| |||||| |||||| | ||||||| || |||| Sbjct 36968 AAAAAATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 36909 Query 57058 TCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||| Sbjct 36908 TCACCACTATACTACCGAGGA 36888 >seq17121 Length=17246 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||||| |||| | ||| |||||| |||||| | ||||||| || |||| Sbjct 15699 AAAAAATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 15640 Query 57058 TCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||| Sbjct 15639 TCACCACTATACTACCGAGGA 15619 >seq16390 Length=175249 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||||| |||| | ||| |||||| |||||| | ||||||| || |||| Sbjct 168638 AAAAAATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 168579 Query 57058 TCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||| Sbjct 168578 TCACCACTATACTACCGAGGA 168558 >seq6400 Length=110026 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||||| |||| | ||| |||||| |||||| | ||||||| || |||| Sbjct 109103 AAAAAATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 109162 Query 57058 TCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||| Sbjct 109163 TCACCACTATACTACCGAGGA 109183 >seq5552 Length=95311 Score = 84.2 bits (92), Expect = 2e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 56998 AAAAATTTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 ||||| ||||||| |||| | ||| |||||| |||||| | ||||||| || |||| Sbjct 77589 AAAAAATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 77530 Query 57058 TCACCACTATACTACCGAGGA 57078 ||||||||||||||||||||| Sbjct 77529 TCACCACTATACTACCGAGGA 77509 >seq18113 Length=219545 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 56999 AAAATT-TTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 57057 |||||| |||||| |||| | ||| |||||| |||||| | ||||||| || |||| Sbjct 131706 AAAATTATTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATAC 131647 Query 57058 TCACCACTATACTACCGAGGAT 57079 |||||||||||||||||||||| Sbjct 131646 TCACCACTATACTACCGAGGAT 131625 >seq17903 Length=44271 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Plus Query 56998 AAAAAT-TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||| ||||||| |||| | ||| |||||| |||||| | ||||||| || ||| Sbjct 29752 AAAAATGTTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATA 29811 Query 57057 CTCACCACTATACTACCGAGGA 57078 |||||||||||||||||||||| Sbjct 29812 CTCACCACTATACTACCGAGGA 29833 >seq17539 Length=118382 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 56998 AAAAAT-TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||| ||||||| |||| | ||| |||||| |||||| | ||||||| || ||| Sbjct 17563 AAAAATGTTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATA 17504 Query 57057 CTCACCACTATACTACCGAGGA 57078 |||||||||||||||||||||| Sbjct 17503 CTCACCACTATACTACCGAGGA 17482 >seq11378 Length=2473 Score = 82.4 bits (90), Expect = 8e-11 Identities = 72/89 (81%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 56992 TTTATGAAAAAT--TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGC 57049 |||||| |||| ||||||| |||| | ||| |||||| |||||| | ||||||| | Sbjct 44 TTTATGCAAAAAGATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGAC 103 Query 57050 GGACATACTCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||||||||| Sbjct 104 GCGGATACTCACCACTATACTACCGAGGA 132 >seq11377 Length=1023 Score = 82.4 bits (90), Expect = 8e-11 Identities = 72/89 (81%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 56992 TTTATGAAAAAT--TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGC 57049 |||||| |||| ||||||| |||| | ||| |||||| |||||| | ||||||| | Sbjct 675 TTTATGCAAAAAGATTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGAC 734 Query 57050 GGACATACTCACCACTATACTACCGAGGA 57078 | ||||||||||||||||||||||||| Sbjct 735 GCGGATACTCACCACTATACTACCGAGGA 763 >seq1043 Length=1081 Score = 82.4 bits (90), Expect = 8e-11 Identities = 68/82 (83%), Gaps = 1/82 (1%) Strand=Plus/Minus Query 56998 AAAAAT-TTTCTCCTCGGCAAGAAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATA 57056 |||||| ||||||| |||| | ||| |||||| |||||| | ||||||| || ||| Sbjct 705 AAAAATGTTTCTCCCCGGCCGGGAATTGAACCCGGGTCTCGCATGTGACAGACGCGGATA 646 Query 57057 CTCACCACTATACTACCGAGGA 57078 |||||||||||||||||||||| Sbjct 645 CTCACCACTATACTACCGAGGA 624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543085029559280