Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq17868 129 6e-25 >seq17868 Length=20976 Score = 129 bits (142), Expect = 6e-25 Identities = 153/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || ||||| |||||||| ||||| || | | ||||| | ||||| |||||| Sbjct 6634 TGAAGTGTGGATTCCTTTTGAATATTGTAGTCGGACAATGTGCGTCCATCTTCCAGCTGC 6575 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || |||||| | || || | |||||||| || || |||||||| || ||||| |||||| Sbjct 6574 TTTCCGGCAAAGATCAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATTTTT 6515 Query 64361 TGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGT 64419 ||||| || ||| | ||| || ||| || ||||| | || | ||||| ||||| Sbjct 6514 -GCTTTCACGTTCTCAATTGTGTCGGAGGCTTCGACTTCCAATGTGATCGTCTTTCCGGT 6456 Query 64420 CAAAGTTTTTACGAAAATTTGCATT 64444 |||||| || ||||| || |||||| Sbjct 6455 CAAAGTCTTGACGAAGATCTGCATT 6431 Score = 116 bits (128), Expect = 4e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || || ||||| ||||| | || |||||| | || Sbjct 6187 AGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTATAATCGGAGAGGGTGCGACCATCC 6128 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| ||||| | ||||| | ||||| || |||||||||||||| || || Sbjct 6127 TCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTGTCC 6068 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || || ||| || || || | || | || Sbjct 6067 TGGATCTTGGCCTTAACATTTTCGATGGTGTCGGAGGCCTCAACCTCGAGGGTGATCGTT 6008 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || |||||||||||||| |||||||||||||| Sbjct 6007 TTTCCGGTCAAAGTTTTGACGAAAATTTGCAT 5976 Score = 113 bits (124), Expect = 5e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 || || ||||| | ||||| || |||||||||||||| || | | |||||| | ||| Sbjct 7099 AGAACGAGATGGAGTGTCGACTCCTTTTGAATGTTGTAGTCCGACAGGGTGCGACCATCT 7040 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || | ||||| ||||| | || || | || ||||| || || ||||| ||||| ||| Sbjct 7039 TCCAATTGCTTTCCGGCGAAGATCAGTCTTTGTTGGTCTGGTGGGATTCCCTCTTTGTCT 6980 Query 64352 TGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || ||||| ||||| ||| || | || || ||| || || || | || | ||| Sbjct 6979 TGGATTTTG-GCTTTGACATTTTCGATAGTGTCGGAGGCCTCGACCTCAAGCGTGATGGT 6921 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 ||| ||||||||||| || || || ||||||||| Sbjct 6920 CTTTCCGGTCAAAGTCTTGACAAAGATTTGCATT 6887 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | ||||| || || || |||||||| || | || ||||| |||| Sbjct 6415 AGCACGAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCC 6356 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||||||||| | || || |||||||| || || |||||||||||||| || Sbjct 6355 TCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGATCTGGTGGAATTCCTTCTTTGTCC 6296 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || || ||| || || || | || | |||| Sbjct 6295 TGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAGGCCTCAACCTCGAGGGTGATGGTC 6236 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || || | || || ||||| || |||||| Sbjct 6235 TTTCCTGTGAGGGTCTTCACGAAGATCTGCATT 6203 Score = 105 bits (116), Expect = 7e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | || || ||||| || ||||| || || | || |||||| | || Sbjct 6871 AGCACAAGATGGAGAGTTGACTCTTTCTGGATGTTATAGTCCGAGAGGGTGCGACCATCC 6812 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||||||||| ||||| | || || | ||||||||| || || |||||||| || || Sbjct 6811 TCAAGCTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCC 6752 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | || || || || ||||| | ||| | ||| Sbjct 6751 TGGATCTTGGCCTTGACGTTTTCGATAGTGTCTGATGCCTCAACTTCCAAAGTGATAGTC 6692 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || || | || || ||||||||||||||| Sbjct 6691 TTTCCAGTGAGGGTCTTCACGAAAATTTGCATT 6659 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || || |||||||| || | || ||||| |||| Sbjct 7603 AGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCGTCC 7544 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || ||||| || ||||| | || || | ||||| || || || |||||||| || || Sbjct 7543 TCGAGCTGTTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCC 7484 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| || | || || ||| || || || | || | |||| Sbjct 7483 TGGATCTTGGCCTTGACATTTTCGATGGTGTCGGAGGCTTCGACCTCAAGCGTGATGGTC 7424 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || ||||||||||| || || |||||||||||| Sbjct 7423 TTTCCGGTCAAAGTCTTCACAAAAATTTGCATT 7391 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || |||| || ||||||||||| |||||||| || | || ||| || | || Sbjct 8334 AGCACAAGGTGAAGAGTGGATTCTTTTTGGATGTTGTAGTCGGAGAGGGTACGGCCATCC 8275 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||| || || | || | |||||||| || || |||||||| || || ||| Sbjct 8274 TCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCT 8215 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| || || | || || || || || || | || | || Sbjct 8214 TGGATCTTGGCCTTGACGTTTTCGATGGTGTCGGATGCTTCGACCTCAAGGGTGATAGTT 8155 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || || || ||||| || ||||| ||||||||| Sbjct 8154 TTTCCAGTTAAAGTCTTGACGAAGATTTGCATT 8122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499527277297480