Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq18085 86.0 6e-12 >seq18085 Length=168442 Score = 86.0 bits (94), Expect = 6e-12 Identities = 275/433 (64%), Gaps = 0/433 (0%) Strand=Plus/Minus Query 95102 TGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAAC 95161 |||| || ||||| ||||| ||||| || ||||| || || ||||| |||||| |||| | Sbjct 27624 TGGCTCCAATGCCGACGGCTTCCACTGCCCAGATACTCGGAAACAATGAGTCGATCGAGC 27565 Query 95162 CCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACA 95221 | | |||||| ||| | ||| | || |||||| |||| || |||| | ||||| Sbjct 27564 CGTACACCTCAAACATCTACTCTCGTCGTGTGCTCTCCGGTGACTTCCAGATTGTCAACC 27505 Query 95222 AGCACCTCCTACGGGACCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAAC 95281 ||| | || |||| || | | || ||||| || || | ||||||| | Sbjct 27504 CACACATGCTCAAGGACTTGGTGGAGCGTGGATTGTGGAACGATGAGATGAAGAACCGTC 27445 Query 95282 TGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCGC 95341 || | | |||||| ||| || | |||| | ||| ||| || || ||| || Sbjct 27444 TGATTGCCAACAACGGATCCATCAAAGACATTGAGGGAATTCCGACCGATCTCCAGGAGC 27385 Query 95342 TCTACAAGACCGTGTGGGAGATCCCGCAGCGCGTGATACTCGACCACGCGGCCGCCCGCG 95401 | ||| || ||||||||||| || || | ||| |||| ||||| | ||| | Sbjct 27384 TGTACCGCACTGTGTGGGAGATTCCACAAAAGGAGATTATCGAGATGGCGGCGGACCGTG 27325 Query 95402 GGCCCTTCATCTGCCAGAGNNNNNNNNNNNNNNNNNNNATGGCCGAGCCCAGTCGCGGAA 95461 | ||| ||| || |||||| |||| || || | Sbjct 27324 GAGCCTACATTGATCAATCGCAGTCGTTGAACATTCATATGGCCAAGCCTAGCTACGCCA 27265 Query 95462 AAATAACGTCCATGTTGTTCTACGGGTGGAGAAAGGGTCTCAAGACCGGTATGTATTATT 95521 || || || ||| || ||||| |||| ||||| |||||||| || ||||| |||| Sbjct 27264 CCATCACCTCGATGCACTTTTACGGATGGAAGAAGGGACTCAAGACGGGAATGTACTATT 27205 Query 95522 TGCGAACCAGGCC 95534 |||| || | ||| Sbjct 27204 TGCGCACGAAGCC 27192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494606834919320