Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq17868 98.7 1e-15 >seq17868 Length=20976 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | ||| | ||| | ||| | | ||||||||||||||||||||||| | Sbjct 7114 CCTCCTCGGAGACGGAGAACGAGATGGAGTGTCGACTCCTTTTGAATGTTGTAGTCCGAC 7055 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || || || | ||| || |||| |||| || | |||||||| || || Sbjct 7054 AGGGTGCGACCATCTTCCAATTGCTTTCCGGCGAAGATCAGTCTTTGTTGGTCTGGTGGG 6995 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || |||||||| |||||| ||| | | ||| | ||||||| | ||| ||| Sbjct 6994 ATTCCCTCTTTGTCTTGGATTTTGGCTTTGACATTTTCGATAGTGTCGGAGGCCTCGACC 6935 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | ||| | || || || |||| ||| || ||||| || ||||| Sbjct 6934 TCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTGACAAAGATTTGCAT 6888 Score = 96.9 bits (106), Expect = 3e-15 Identities = 139/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| || |||||||||||| | ||| || ||||||||| ||||| |||| Sbjct 7587 TTGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCGTCCTCGAGCTGTTTTCCGG 7528 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| || | || || || || || || ||||| ||||| ||| || || | Sbjct 7527 CGAAGATCAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGA 7468 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | ||| | |||||||| | || ||||| | ||| | || || || |||| ||| | Sbjct 7467 CATTTTCGATGGTGTCGGAGGCTTCGACCTCAAGCGTGATGGTCTTTCCGGTCAAAGTCT 7408 Query 138599 TTACAAAAATCTGCAT 138614 | |||||||| ||||| Sbjct 7407 TCACAAAAATTTGCAT 7392 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || ||||||||| || || |||| Sbjct 6397 GACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCG 6338 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || ||||| || || || || || ||||||||||| ||| || || | Sbjct 6337 AAGATAAGGCGCTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTGACA 6278 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | |||||||| | ||| ||||||| || | || || || || || || || Sbjct 6277 TTTTCAATGGTGTCGGAGGCCTCAACCTCGAGGGTGATGGTCTTTCCTGTGAGGGTCTTC 6218 Query 138601 ACAAAAATCTGCAT 138614 || || |||||||| Sbjct 6217 ACGAAGATCTGCAT 6204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496145672880240