Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq17868 87.8 1e-12 >seq17868 Length=20976 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || |||||||| |||||||| ||| ||| | | | || || | || Sbjct 8325 TGAAGAGTGGATTCTTTTTGGATGTTGTAGTCGGAGAGGGTACGGCCATCCTCGAGCTGC 8266 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || |||||| | ||||||||||| || || |||||||| |||||||| || ||| Sbjct 8265 TTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGGATCTTG 8206 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || || |||| || || ||| ||| || || | ||| || ||||| || || Sbjct 8205 GCCTTGACGTTTTCGATGGTGTCGGATGCTTCGACCTCAAGGGTGATAGTTTTTCCAGTT 8146 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 | ||| || || || |||||||| Sbjct 8145 AAAGTCTTGACGAAGATTTGCAT 8123 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || || || || || || |||||||| ||| |||| | | |||| || | ||| Sbjct 7594 TGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCGTCCTCGAGCTGT 7535 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || ||| | |||| | || || || ||| |||||||||||||| || ||| Sbjct 7534 TTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTG 7475 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| |||| || || ||| ||| || || | || ||||| || || ||| Sbjct 7474 GCCTTGACATTTTCGATGGTGTCGGAGGCTTCGACCTCAAGCGTGATGGTCTTTCCGGTC 7415 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 | ||| || |||||||||||||| Sbjct 7414 AAAGTCTTCACAAAAATTTGCAT 7392 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357310038510845