Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq17868 111 1e-19 >seq17868 Length=20976 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || || |||||||| || ||||| ||| | || || ||| || ||||| |||||| Sbjct 8319 GTGGATTCTTTTTGGATGTTGTAGTCGGAGAGGGTACGGCCATCCTCGAGCTGCTTTCCA 8260 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| ||||||| ||||||||||| || || || ||||||||||| ||| || |||| Sbjct 8259 GCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGGATCTTGGCCTTG 8200 Query 127037 AGTTGTTCGACGGTGTCCG-TACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | ||||| |||||| | | || ||||| || | ||| | ||||| || || | ||| Sbjct 8199 ACGTTTTCGATGGTGTCGGATGCT-TCGACCTCAAGGGTGATAGTTTTTCCAGTTAAAGT 8141 Query 127096 TTTTACAAAAATCTGCAT 127113 || || || || ||||| Sbjct 8140 CTTGACGAAGATTTGCAT 8123 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| | |||||| || || ||||||||||| Sbjct 7588 GTTGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCGTCCTCGAGCTGTTTTCCG 7529 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||||| || |||||||| || || || || ||||||||| ||| || |||| Sbjct 7528 GCGAAGATCAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTG 7469 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||||| |||||| | ||||| || | || | || || ||||||| ||| Sbjct 7468 ACATTTTCGATGGTGTCGGAGGCTTCGACCTCAAGCGTGATGGTCTTTCCGGTCAAAGTC 7409 Query 127097 TTTACAAAAATCTGCAT 127113 || |||||||| ||||| Sbjct 7408 TTCACAAAAATTTGCAT 7392 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || || || |||||||||||||| ||| || ||||| ||| || Sbjct 6640 ACCAAGTGAAGTGTGGATTCCTTTTGAATATTGTAGTCGGACAATGTGCGTCCATCTTCC 6581 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| ||||| || |||||| || ||||| || || || || || ||||||| | || Sbjct 6580 AGCTGCTTTCCGGCAAAGATCAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGT-CTTG 6522 Query 127025 ATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 | ||| ||| || | | || | ||||| | |||||||| | || | ||| || Sbjct 6521 AATTTTTGCTTTCACGTTCTCAATTGTGTCGGAGGCTTCGACTTCCAATGTGATCGTCTT 6462 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||||| ||| || || || |||||||| Sbjct 6461 TCCGGTCAAAGTCTTGACGAAGATCTGCAT 6432 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| || | |||||| ||| || ||||||||||| Sbjct 7816 GTCGACTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGGCCATCCTCAAGCTGTTTTCCG 7757 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | || | || |||||| || || || || ||||||||||| ||| || ||| Sbjct 7756 GCGAAAATAAGTCTCTGCTGGTCTGGCGGGATACCCTCCTTGTCTTGGATCTTGGCCTTC 7697 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||||| ||||| | |||||||| | ||| | || || ||||| || || Sbjct 7696 ACATTTTCGATTGTGTCGGAGGCTTCGACTTCAAGGGTGATGGTCTTTCCGGTGAGGGTC 7637 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 7636 TTCACGAAGATCTGCAT 7620 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || || || ||||| ||| | |||||| || || ||||| || || Sbjct 6400 GTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 6341 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | ||||||||||| || || || || || |||||| ||| || |||| Sbjct 6340 GCGAAGATAAGGCGCTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTG 6281 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | |||||| | ||| || |||| ||| | || || || || || || Sbjct 6280 ACATTTTCAATGGTGTCGGAGGCCTCAACCTCGAGGGTGATGGTCTTTCCTGTGAGGGTC 6221 Query 127097 TTTACAAAAATCTGCAT 127113 || || || |||||||| Sbjct 6220 TTCACGAAGATCTGCAT 6204 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475388956268080