Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq17868 127 2e-24 seq17886 82.4 7e-11 >seq17868 Length=20976 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | ||| | | ||| || || || ||||| ||||| ||||| ||||||||| Sbjct 6205 ATTCCTCCTCTGAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTATAATCG 6146 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | ||| || | || ||||| ||| | || | || |||||| || || Sbjct 6145 GAGAGGGTGCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGATCTGGA 6086 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 ||||| ||||| || || || || || || | ||| | ||||||||| | ||| Sbjct 6085 GGAATTCCTTCCTTGTCCTGGATCTTGGCCTTAACATTTTCGATGGTGTCGGAGGCCTCA 6026 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || ||||| || | |||||| ||||| | |||||| || ||||||||||| Sbjct 6025 ACCTCGAGGGTGATCGTTTTTCCGGTCAAAGTTTTGACGAAAATTTGCAT 5976 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||||||||| | | ||| ||||| || ||||| || || ||||| ||||| || Sbjct 6889 ATTCCTCCGCGGAGACGGAGCACAAGATGGAGAGTTGACTCTTTCTGGATGTTATAGTCC 6830 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| | ||| || | || ||||| ||| | |||| || |||||||| || Sbjct 6829 GAGAGGGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCTGGT 6770 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || || || || || |||| ||| | ||||| || | ||| Sbjct 6769 GGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTTTCGATAGTGTCTGATGCCTCA 6710 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| | ||| | || || || || || || || || ||||||||||| Sbjct 6709 ACTTCCAAAGTGATAGTCTTTCCAGTGAGGGTCTTCACGAAAATTTGCAT 6660 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | ||| | | ||| || || || ||||| ||||| ||||| || || ||| Sbjct 7621 ATTCCTCCTCTGAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCG 7562 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || | || || | |||||||| ||| | |||| || |||||| || || Sbjct 7561 GAGAGAGTGCGACCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGT 7502 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCG 45290 || || ||||| || || || || || |||| ||| | ||||||||| | ||| Sbjct 7501 GGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCGGAGGCTTCG 7442 Query 45291 ACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || || ||||| | ||| || |||||||||||||| Sbjct 7441 ACCTCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTCACAAAAATTTGCAT 7392 Score = 102 bits (112), Expect = 7e-17 Identities = 165/233 (71%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 |||||||| | ||| | | || | || || || ||||||||||| ||||| || ||| Sbjct 6661 ATTCCTCCTCTGAGGCGGAGAACCAAGTGAAGTGTGGATTCCTTTTGAATATTGTAGTCG 6602 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | ||| |||| || ||||| || | |||| || ||||||||| | Sbjct 6601 --GACAATGTGCGTCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGTCTTTGCTGGTCTG 6544 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287 | || || ||||| || |||||||||||| ||| | || | || | |||||||| | Sbjct 6543 GTGGGATTCCTTCCTTGTCTTGAATTTTTGCTTTCA-CGTTCTCAATTGTGTCGGAGGCT 6485 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||| | || | ||| || ||||| | ||| || || || || ||||| Sbjct 6484 TCGACTTCCAATGTGATCGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 6432 >seq17886 Length=112081 Score = 82.4 bits (90), Expect = 7e-11 Identities = 102/140 (73%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 45201 CCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGT 45260 || ||| | ||||||| |||||| || || || || ||||| || ||||| || || Sbjct 4831 CCGGCGAAGATCAATCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCTTGGATCTTAGCC 4890 Query 45261 TTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGA 45320 |||| || | ||| ||||| | |||||||||||| |||| || || || || ||| Sbjct 4891 TTGACATTCTCGATGGTATCGGAGGCCTCGACTTCGAGGGTAATTGTCTTACCCGTCAGA 4950 Query 45321 GTTTTTACAAAAATTTGCAT 45340 || || || || |||||||| Sbjct 4951 GTCTTGACGAAGATTTGCAT 4970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451896883197320