Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq18085 102 1e-16 seq17815 95.1 1e-14 >seq18085 Length=168442 Score = 102 bits (112), Expect = 1e-16 Identities = 292/441 (66%), Gaps = 10/441 (2%) Strand=Plus/Plus Query 115564 TAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTG 115623 |||||||| ||||||||||| |||| |||||| | || | ||||| |||| | || Sbjct 27207 TAGTACATTCCCGTCTTGAGTCCCTTCTTCCATCCGTAAAAGTGCATCGAGGTGATGGTG 27266 Query 115624 GAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCC 115683 | | | || | |||| | ||||| || |||||||| ||| || ||| Sbjct 27267 GCGTAGCTAGGCTTGGCCATATGAATGTTCAACGACTGCGATTGATCAATGTAGGCTCCA 27326 Query 115684 CGATCCGCCGCCATATCAATCACATCCTTCATCTTGATT-TCCCACACAGTTCTGTAGAG 115742 || ||||||||||| || || | ||||| | | || | ||||||||||| | ||| || Sbjct 27327 CGGTCCGCCGCCATCTCGATAATCTCCTTT-TGTGGAATCTCCCACACAGTGCGGTACAG 27385 Query 115743 GTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCTTGACCAT 115802 | || | ||| || || || | || | || ||| || || || ||| | || Sbjct 27386 CTCCTGGAGATCGGTCGGAATTCCCTCAATGTCTTTGATGGATCCGT-TG--TTGGCAAT 27442 Query 115803 GAGA---TCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCTCCACGAGGTG 115859 ||| | |||||| || | ||| | ||| || | | |||| | | ||| Sbjct 27443 CAGACGGTTCTTCATCTCATCGTTCCACAATCCACGCTCCACCAAGTCCTTGAGCATGTG 27502 Query 115860 CTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGA-TAGATGTTGGTCGTGT 115918 ||||||| || ||||| | ||| || | ||| |||||||| | |||| Sbjct 27503 TGGGTTGACAATCTGGAAGTCACCGGAGAGCACACGACG-AGAGTAGATGTTTGAGGTGT 27561 Query 115919 ATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTG 115978 | ||||| | |||||||||| || | || ||||| ||||| || || ||||| || | Sbjct 27562 ACGGCTCGATCGACTCATTGTTTCCGAGTATCTGGGCAGTGGAAGCCGTCGGCATTGGAG 27621 Query 115979 CCATGAGAAGGCTGTTGCGGA 115999 |||||||||| |||||||||| Sbjct 27622 CCATGAGAAGACTGTTGCGGA 27642 Score = 93.3 bits (102), Expect = 5e-14 Identities = 273/419 (65%), Gaps = 9/419 (2%) Strand=Plus/Plus Query 116857 ATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGACGA---CCAGCC 116913 ||||| ||||||||||| |||||||| | |||| | ||| ||| ||| || Sbjct 30022 ATATCGGCGTGCCACGGCTCCAGGTAGATGGCGAACGCTCCCGGGCGCTTGTTGCCACCC 30081 Query 116914 TGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCAGAT 116973 || | || || | || || ||| | ||||||||||| ||||| | || | || Sbjct 30082 TGATCGACGTAACGAGCAGTGTTGTTGTAGACGCGAAGCATCGGAATCAGTCCGTTCGAC 30141 Query 116974 TGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACATCGTGGATGTGCATACCA 117033 || || || || ||| || | |||| | | | ||| | || | ||| Sbjct 30142 GTTCCGTTGGTGCCAGCAATCACCGATCCGGTGGCACGAATCTTGTGCACGTTGAGACCG 30201 Query 117034 ATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATCCCATCG 117093 || || ||||| | ||| || || | ||||| | | || || | ||||| || Sbjct 30202 ATTCCACCTGCGCTCTTCGATATAAGGGCGCATTGTTTTAGCGTGTCATAGATTCCCAGA 30261 Query 117094 ATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCA 117153 ||||||||| | | | | || |||||||| |||||||||||||| ||| ||| Sbjct 30262 ATCGAGTCATCACTCATCGTGAGCAGGAAGCACGACGACATTTGTGGCCGGCATGTTCCA 30321 Query 117154 GCGTTGAAGAGGGTTGGTGTCGCGTG---GATGAACATACCTTGGGACATCTTATCGTAG 117210 | |||||| || ||||| | ||||| |||||| | || |||||| || ||| Sbjct 30322 GAGTTGAAAAGAGTTGGAGAGGCGTGCGTCATGAAC---CGTTCCGACATCAAATTGTAC 30378 Query 117211 GTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAAACAT 117269 || || | | | || | || ||||| ||||| || ||||| | ||| ||||| ||||| Sbjct 30379 GTTTCGATGGCTGAAGCGATATCTTCTCCGTGTATTCCGATGGCGACACGCATCAACAT 30437 >seq17815 Length=64061 Score = 95.1 bits (104), Expect = 1e-14 Identities = 182/265 (69%), Gaps = 4/265 (2%) Strand=Plus/Plus Query 175927 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATT 175986 |||||| ||||| ||||| || || ||||| ||| ||| || | |||||| || Sbjct 22489 ATCTTTTCCACCTTGAAGACGAGTACCGAATTGTCCAATCGGCAGCAGCAAATTGATGTT 22548 Query 175987 GTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCACC 176046 ||| ||||| | | | || | |||||| |||||||| || || || || ||||| Sbjct 22549 GTTAGAGCCAACAAAATCCTGCGCCAAGTTGACAATAGTGCCCATAAGCGACTGCTCACC 22608 Query 176047 GTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCTCATC 176106 ||||||||||| || || || ||| | |||| ||| || || |||| ||| || Sbjct 22609 ATGATGGTAGGCAGAGAGCTCGGCGACAGCTCCAGCCAGCTGGGCAACTTTCACCTC-TC 22667 Query 176107 CTTGA--GGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCG 176164 || | || | | | |||||| || ||| ||| || | |||| |||||||| ||| Sbjct 22668 GTTTATCGGCACGT-TTGAAGCAGGCGAACAAGACTTTACGCTGTCCAGGCTTGAATCCG 22726 Query 176165 TCGGCCATGTGTGCGATGGAACGCT 176189 ||| | | | || |||||||||| Sbjct 22727 TCGACAAGGCATGGAATGGAACGCT 22751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613362895437720