Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq18085 178 2e-39 seq17418 105 1e-17 >seq18085 Length=168442 Score = 178 bits (196), Expect = 2e-39 Identities = 340/493 (69%), Gaps = 6/493 (1%) Strand=Plus/Plus Query 203840 TTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCG 203899 ||||| || |||||||||| ||||| ||||| ||| | | | || ||||||||| || Sbjct 27159 TTGTCGACAGTGAACTGAACAGCGTTGACGGCCGGCTTCGTGCGCAAATAGTACATTCCC 27218 Query 203900 GTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACA-GTTTGCTCACGTTGGG 203958 ||||| || ||||||| ||| ||||| | |||||| || | | | | || | | | || Sbjct 27219 GTCTTGAGTCCCTTCTTCCATCCGTAAAAGTGCATCGAGGTGATGGTGGCGTA-GCTAGG 27277 Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGG 204017 | |||||| |||||||||| ||||| ||| || ||| | ||| || || || || | Sbjct 27278 CTTGGCCATATGAATGTTCAACGACTGCGATTGATCAATGTA-GGCTCCACGGTCCGCCG 27336 Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGT 204077 |||| | |||||| ||| || | |||||||||||| || | ||| || |||| | Sbjct 27337 CCATCTCGATAATCTCCTTTTGTGGAATCTCCCACACAGTGCGGTACAGCTC-CTGGAGA 27395 Query 204078 GTTGAGGCACATCTTCCCACGTC-CTGATCGAGCCGTTGTCGGCCATCAGTCTCATCCTC 204136 | | | || | | ||| |||| || ||||||| ||| ||||| | || || Sbjct 27396 TCGGTCGGAATTCCCTCAATGTCTTTGATGGATCCGTTGTTGGCAATCAGACGGTTCTTC 27455 Query 204137 GTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATC 204196 |||| || ||||| || | | || ||| | || ||| ||||||| ||| Sbjct 27456 ATCTCATCGTTCCACAATCCACGCTCCACCAAGTCCTTGAGCATGTGTGGGTTGACAATC 27515 Query 204197 TGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCC 204256 || ||||| ||||| ||||| | || | | | | ||| |||| | || |||| || | Sbjct 27516 TGGAAGTCACCGGAGAGCACACGACGAGAGTAGATGTTTGAGGTGTACGGCTCGATCGAC 27575 Query 204257 TCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAG 204316 || ||||| |||| ||||| || ||| ||||| ||||| ||||||| ||| || | Sbjct 27576 TCATTGTTTCCGAGTATCTGGGCAGTGGAAGCCGTCGGCATTGGAGCCATGAGAAGACTG 27635 Query 204317 TTGCGCACACCGT 204329 ||||| | |||| Sbjct 27636 TTGCGGATTCCGT 27648 >seq17418 Length=39954 Score = 105 bits (116), Expect = 1e-17 Identities = 211/307 (69%), Gaps = 8/307 (3%) Strand=Plus/Plus Query 159952 CCGAGAGATGAACTCGTTGGACATGA-TGAGGCCCGGCATGATCCCACGCGGTTTGAGCC 160010 || ||| || | ||||| || |||| |||| || ||||||| ||||||| ||| |||| Sbjct 727 CCTAGAAATCAGTTCGTTAGA-ATGAGTGAGCCCTGGCATGAGCCCACGCTTTTTAAGCC 785 Query 160011 AAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGA 160070 ||||||||| || |||| || ||||||||||| || || || || || ||||| | | Sbjct 786 AAAAAATGGAGGCGAAAGATCCACTAAAAAAGATTCCTTCGACAGCAGCGAACGCGATAA 845 Query 160071 GCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCT 160130 | ||||| |||| || || || |||| |||| | ||||| || ||||||| Sbjct 846 GTCTCTCGGCAAATGACGCTTTCTTGTCCGAAATCCAACGGAGAGCCCAGTCGGCCTTCT 905 Query 160131 TTGCGATGCACGGCATGCGCTCG---ACGGCGTTAAACAATCTGTCCTGCTCCTTCACAT 160187 | |||| || || |||| | ||||||| || | ||| |||| | | | Sbjct 906 TCTTGATGAAC-TCA--AACTCGAAAATTGCGTTAAGCAGTGTGTGACGCTCTGTTTCGT 962 Query 160188 CCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGCACATTTTCGATGGCCA 160247 | || || | || ||||||||||||||||| | ||| | ||| |||||||| | Sbjct 963 CTCGAATGTACGTCTCGATGAGCTTCGAGTACATTTCCGAGTGAATATTCTCGATGGCGA 1022 Query 160248 TCTGAAA 160254 | || || Sbjct 1023 TTTGGAA 1029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794968169557520