Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq17868 152 1e-31 >seq17868 Length=20976 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||| |||||||| ||||| || |||| ||| ||||| | | || | ||||| Sbjct 6871 AGCACAAGATGGAGAGTTGACTCTTTCTGGATGTTATAGTCCGAGAGGGTGCGACCATCC 6812 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||||||||||||||| || | ||||||||| || |||||||| ||| Sbjct 6811 TCAAGCTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCC 6752 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| ||||| ||||||| || || || ||||| ||||| ||| Sbjct 6751 TGGATCTTGGCCTTGACGTTTTCGATAGTGTCTGATGCCTCAACTTCCAAAGTGATAGTC 6692 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||| |||||||| Sbjct 6691 TTTCCAGTGAGGGTCTTCACGAAAATTTG 6663 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||||||||| |||||||| |||| ||||||||| | | ||| | || || Sbjct 7603 AGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCGTCC 7544 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||| |||||||||||||| || | ||||| || || |||||||| ||| Sbjct 7543 TCGAGCTGTTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCC 7484 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || ||||| |||||| | | ||| || || | |||||| ||| Sbjct 7483 TGGATCTTGGCCTTGACATTTTCGATGGTGTCGGAGGCTTCGACCTCAAGCGTGATGGTC 7424 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||| |||||||||||||| Sbjct 7423 TTTCCGGTCAAAGTCTTCACAAAAATTTG 7395 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||||||||| |||||||| |||| ||| || || | | || | ||||| Sbjct 6187 AGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTATAATCGGAGAGGGTGCGACCATCC 6128 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||||||||||||||||||||| | ||||| || ||| ||||||||| ||| Sbjct 6127 TCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTGTCC 6068 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || ||||| |||||| | | || || || | |||||||| Sbjct 6067 TGGATCTTGGCCTTAACATTTTCGATGGTGTCGGAGGCCTCAACCTCGAGGGTGATCGTT 6008 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | |||||| || |||||||| Sbjct 6007 TTTCCGGTCAAAGTTTTGACGAAAATTTG 5979 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 || ||||| || || |||||||| ||||||||||| |||| ||||||||| | | || Sbjct 6425 TCTAAGTCGGAGCACGAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGT 6366 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | || || || |||||||| ||||||||||| || |||||||| || || |||||| Sbjct 6365 GCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGATCTGGTGGAATTCC 6306 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 |||| ||||| ||||| ||| || ||| | |||||| | | || || || | Sbjct 6305 TTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAGGCCTCAACCTCGAG 6246 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || ||||| || ||||| || || || Sbjct 6245 GGTGATGGTCTTTCCTGTGAGGGTCTTCACGAAGATCTG 6207 Score = 129 bits (142), Expect = 1e-24 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| || || || |||||||| | |||||||| | ||| || | ||||||| Sbjct 6643 AGAACCAAGTGAAGTGTGGATTCCTTTTGAATATTGTAGTCGGACAATGTGCGTCCATCT 6584 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||||||||| ||||| || | |||||||| || |||||||| || Sbjct 6583 TCCAGCTGCTTTCCGGCAAAGATCAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTGTCT 6524 Query 199538 TGAATCTTTTGCTT-CACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||| |||||||| |||| || | ||||| | | ||| || ||||| |||||||| Sbjct 6523 TGAAT-TTTTGCTTTCACGTTCTCAATTGTGTCGGAGGCTTCGACTTCCAATGTGATCGT 6465 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || | ||| || || || || || Sbjct 6464 CTTTCCGGTCAAAGTCTTGACGAAGATCTG 6435 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || |||||||| ||||| || || ||||||| ||||||||| | | || Sbjct 8343 CGAAGACGGAGCACAAGGTGAAGAGTGGATTCTTTTTGGATGTTGTAGTCGGAGAGGGTA 8284 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || ||||||||||| |||||||| | ||||||||| || || |||||| Sbjct 8283 CGGCCATCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCC 8224 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| ||| ||||| |||||| | || ||| || || | Sbjct 8223 TCCTTGTCTTGGATCTTGGCCTTGACGTTTTCGATGGTGTCGGATGCTTCGACCTCAAGG 8164 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| || || || || | ||| || || || ||||| Sbjct 8163 GTGATAGTTTTTCCAGTTAAAGTCTTGACGAAGATTTG 8126 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || ||||||||||| ||||||||||| |||| ||||||||||| | || | ||||| Sbjct 7831 AGAACAAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGGCCATCC 7772 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || ||||| ||||||||||| || || | ||||||||| || || || || || Sbjct 7771 TCAAGCTGTTTTCCGGCGAAAATAAGTCTCTGCTGGTCTGGCGGGATACCCTCCTTGTCT 7712 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| ||||| ||||| | | ||| || || | ||||| ||| Sbjct 7711 TGGATCTTGGCCTTCACATTTTCGATTGTGTCGGAGGCTTCGACTTCAAGGGTGATGGTC 7652 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || ||||| || || || Sbjct 7651 TTTCCGGTGAGGGTCTTCACGAAGATCTG 7623 Score = 114 bits (126), Expect = 3e-20 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || || ||||| |||||||||||||| | ||||||||| | || || | |||||| Sbjct 7099 AGAACGAGATGGAGTGTCGACTCCTTTTGAATGTTGTAGTCCGACAGGGTGCGACCATCT 7040 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||||||||||||||| || | || ||||| || ||||| ||| || Sbjct 7039 TCCAATTGCTTTCCGGCGAAGATCAGTCTTTGTTGGTCTGGTGGGATTCCCTCTTTGTCT 6980 Query 199538 TGAATCTTTTGC-TTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 || || ||| || || || ||||| ||||| | | || || || | |||||| || Sbjct 6979 TGGAT-TTTGGCTTTGACATTTTCGATAGTGTCGGAGGCCTCGACCTCAAGCGTGATGGT 6921 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| || || | ||| || ||||| ||||| Sbjct 6920 CTTTCCGGTCAAAGTCTTGACAAAGATTTG 6891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178637370475739