Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq17868 95.1 8e-15 >seq17868 Length=20976 Score = 95.1 bits (104), Expect = 8e-15 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 || || ||||| || | ||| ||| ||||| ||||| || |||| ||| |||| || Sbjct 6646 CGGAGAACCAAGTGAAGTGTGGATTCCTTTTGAATATTGTAGTCGGACAATGTGCGTCCA 6587 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || |||| || || ||| |||| || | | ||||| || | || | ||||| ||| Sbjct 6586 TCTTCCAGCTGCTTTCCGGCAAAGATCAGTCTTTGCTGGTCTGGTGGGATTCCTTCCTTG 6527 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || |||||| ||| | || | | |||||| | | ||| || ||||| || || Sbjct 6526 TCTTGAATTTTTGCTTTCACGTTCTCAATTGTGTCGGAGGCTTCGACTTCCAATGTGATC 6467 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || || ||||| || |||||||||||||| Sbjct 6466 GTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 6432 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347289936969761