Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq17868 150 2e-31 >seq17868 Length=20976 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || ||||| || || ||||||||| |||| || |||||| | Sbjct 6203 AATGCAGATCTTCGTGAAGACCCTCACAGGAAAGACCATCACCCTCGAGGTTGAGGCCTC 6262 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||||| | | ||| | || | || |||| |||||||| |||||||| | || || Sbjct 6263 CGACACCATTGAAAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCACCAGATCA 6322 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||| ||||| ||||| || |||| ||||| ||| ||||||||| Sbjct 6323 GCAGCGCCTTATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGCACGCTCTCCGACTACAA 6382 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| |||| || || | ||||| || | ||||| || Sbjct 6383 CATCCAGAAGGAGTCGACACTCCACCTCGTGCTCCGACTTAGAGGAGG 6430 Score = 129 bits (142), Expect = 6e-25 Identities = 161/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| || || | || || ||||| |||||| | || ||||| || | Sbjct 8122 AATGCAAATCTTCGTCAAGACTTTAACTGGAAAAACTATCACCCTTGAGGTCGAAGCATC 8181 Query 38303 CGACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 ||||| | | | ||||| | || | || |||| ||||| |||||||||||| | || | Sbjct 8182 CGACACCATCGAAAACG-TCAAGGCCAAGATCCAAGACAAGGAGGGAATTCCCCCAGATC 8240 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | || | ||| || || ||||| || || | || |||||| |||||||| Sbjct 8241 AGCAGCGTTTGATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGTACCCTCTCCGACTACA 8300 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||| ||| | || || || | ||||| ||| Sbjct 8301 ACATCCAAAAAGAATCCACTCTTCACCTTGTGCTCCGT 8338 Score = 125 bits (138), Expect = 7e-24 Identities = 160/218 (73%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || ||||| || || ||||||||| | || ||||| ||| | Sbjct 7619 AATGCAGATCTTCGTGAAGACCCTCACCGGAAAGACCATCACCCTTGAAGTCGAAGCCTC 7678 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 ||||| | ||| | || | || |||| ||||| ||||| || |||||| |||| Sbjct 7679 CGACACAATCGAAAATGTGAAGGCCAAGATCCAAGACAAGGAGGGTAT-CCCGCCAGACC 7737 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| | || |||| ||| || |||||||| || || | ||||| ||| ||||||| Sbjct 7738 AGCAGAGACTTATTTTCGCCGGAAAACAGCTTGAGGATGGCCGCACGCTCTCTGACTACA 7797 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||| ||||| |||| || || | || || ||| Sbjct 7798 ACATCCAGAAGGAGTCGACACTCCACCTTGTTCTCCGT 7835 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || || || | || || || |||||||| | || ||||||||| | Sbjct 6887 AATGCAAATCTTTGTCAAGACTTTGACCGGAAAGACCATCACGCTTGAGGTCGAGGCCTC 6946 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||||| | ||| | |||| ||||||| |||||||||||||| || | ||||| Sbjct 6947 CGACACTATCGAAAATGTCAAAGCCAAAATCCAAGACAAAGAGGGAATCCCACCAGACCA 7006 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | || || | ||| || || || |||| || | |||||||| |||||||| Sbjct 7007 ACAAAGACTGATCTTCGCCGGAAAGCAATTGGAAGATGGTCGCACCCTGTCGGACTACAA 7066 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||| |||||||| |||| || ||| | || || ||| | |||| || Sbjct 7067 CATTCAAAAGGAGTCGACACTCCATCTCGTTCTCCGTCTCCGAGGAGG 7114 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| || || || || | || || || |||||||| | || ||||| ||| | Sbjct 7391 AATGCAAATTTTTGTGAAGACTTTGACCGGAAAGACCATCACGCTTGAGGTCGAAGCCTC 7450 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||||| | | ||| | || | || |||| ||||| || ||||| || | || || Sbjct 7451 CGACACCATCGAAAATGTCAAGGCCAAGATCCAGGACAAGGAAGGAATCCCACCAGATCA 7510 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || | || || | ||| || |||||||| || |||| ||||| ||| ||||||||| Sbjct 7511 GCAAAGACTGATCTTCGCCGGAAAACAGCTCGAGGACGGTCGCACTCTCTCCGACTACAA 7570 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 |||||| ||||| | || || || | ||||| ||| | ||||| || Sbjct 7571 CATCCAGAAGGAGTCAACTCTCCACCTTGTGCTCCGTCTCAGAGGAGG 7618 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500055153105280