Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq17187 235 4e-56 seq18150 224 7e-53 >seq17187 Length=48460 Score = 235 bits (260), Expect = 4e-56 Identities = 711/1079 (66%), Gaps = 27/1079 (3%) Strand=Plus/Plus Query 517244 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 517303 || || || || || |||||||| |||||||| || || ||||| | ||| |||||||| Sbjct 46098 GTAGACTTGTCTGCAGCAGTCACGTTAAGAATTCCGTTTGCATCGATATCGAATGTGACG 46157 Query 517304 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGA 517363 ||||||||||| | || | | || |||||||| || | | || ||||| ||| Sbjct 46158 TCAATTTGAGGAATACCGCGTGGTGCCGGTGGGATTCCAGTGAGTTCGAAAGTTCCAAGA 46217 Query 517364 TTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT 517423 | ||| ||| ||| | | ||||| |||||| ||| ||| || | || | | | Sbjct 46218 CGGTGATTGTCTCGAGTCATTGCACGTTCTCCCTCGTAAACTTGAATGGAGACGCCTGGT 46277 Query 517424 TGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTA 517483 || || || | || || || || |||| || ||||| |||||| | Sbjct 46278 TGGTTGTCGGCGTATGTGGTGAACGTCTTGGAAGCCTTGGTTGGAATGCGTGTGTTGCGC 46337 Query 517484 TCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACA 517543 || || | || ||||| || ||||| ||||| || | |||||| || |||| || Sbjct 46338 TCGATCAGGTTAGTCATCATTCCACCGGCTGTCTCGATTCCAAGACTGAGCGGAGCCACG 46397 Query 517544 TCAACTAGGACAATAT-TTTGA-AGTTTTTCATCAGTTTGA--CCAACAAGAATAGCTGC 517599 || || || | || | ||||| || ||| ||| |||| ||| ||||| ||| || Sbjct 46398 TCGACGAGCAGAACGTCTTTGATAG--TTTGATC--CTTGACTCCAGAAAGAACAGCGGC 46453 Query 517600 TTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTT 517659 ||| | || |||||| ||||||| |||||||| ||||| | | || |||| || Sbjct 46454 TTGCACGGCGGCACCAAATGCAACCGCTTCATCCGGATTGATCGAGCAGTTGAGTTCCTT 46513 Query 517660 ACCATTGAAAAAAT--TTGAAAGAAGTTGTCT-TACCTTAGGAATACGAGATGATCCTCC 517716 || |||||||| | ||| || || | ||| | ||| || | |||| |||||||| Sbjct 46514 GCCGTTGAAAAAGTCCTTG--AGCAGCT-TCTGGATCTTCGGCACCCGAGTCGATCCTCC 46570 Query 517717 AACTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTC 517776 ||| | || | ||| | | | |||||| || || |||| ||| | | ||||||| Sbjct 46571 AACGAGCACCACTTCGTCTATTTTTGATTTGTCAAGCTTTGCATCACGAAGAGCTTTTTC 46630 Query 517777 AACGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGT 517836 ||| ||||||||| | | || | || || || || |||||||| || | ||| Sbjct 46631 AACTGGTTCAAGAGTCTTGCGGAAGAGATCGGAGCAGAGCTCTTCGAAACGGGCACGAGT 46690 Query 517837 AAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGT 517896 | | | | ||||||| |||||||| | |||||| ||||| || || | || | Sbjct 46691 GATCTTTGAGTGAAAATCAATACCTTCGAAAAGAGAATCCACTTCGATTGTGGCTTCTGA 46750 Query 517897 CGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTT 517956 ||| || || | | ||| |||||||| ||||| || | || | ||||| ||| Sbjct 46751 CGAGCTTGAAAGAGTTCTTTTGGCACGTTCGCATGCAGTTCGCAGACGTCGTATGGCACG 46810 Query 517957 TGCTGATTGATTCAAATCTGTTT--TATATTTTCTCTTGAAATC-TTCAACACACCATGT 518013 || ||||| | |||||| ||| | |||||| ||||| || |||| | || Sbjct 46811 TG--GATTGGGTGAAATCTCTTTGCCAGTTTTTCTTTTGAACTCGTTCATAAAGTGCTGC 46868 Query 518014 TACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTAC 518073 || | ||| | ||||| || || ||||| | | ||| | || | ||| | ||| || Sbjct 46869 AAC-ATACGTTGGTCAAAGTCCTCGCCTCCGAGATGAGTGTCACCAGCCGTCGATCTCAC 46927 Query 518074 TTGGAAAA---GTCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCAT 518130 || |||| ||| || | | || | | | |||||| || |||||||||| Sbjct 46928 TTCAAAAATGGATCCTTCAGCGATCGAGAGGATGGAAACATCAAAAGTGCCACCACCCAG 46987 Query 518131 ATCAAAAATAAGTACATTCATTTCT-TTGTCT-TGGTTTTTATCAAGACCATACGCAAAA 518188 ||| || || || ||||| ||||| | || | ||| || || || || || | | Sbjct 46988 ATCGAAGATGAGCACATT--TTTCTCATCACTGATGCCTTTGTCGAGTCCGTAAGCGAGA 47045 Query 518189 GCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCA 518248 || ||||| |||||||| || || |||| | | || || || ||||| | | ||| Sbjct 47046 GCTGCAGCTGTTGGTTCGTTGATGATTCGGATGGCGTTGAGTCCGGCAATAGTGGCCGCA 47105 Query 518249 TCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 518307 ||||| || || || || || ||||| || ||||| || ||||| || || || || Sbjct 47106 TCTTTCGTCGCCTGCCTCTGACTGTCGTTGAAGTATGCCGGCACAGTGATTACAGCGTC 47164 >seq18150 Length=702657 Score = 224 bits (248), Expect = 7e-53 Identities = 706/1081 (65%), Gaps = 31/1081 (3%) Strand=Plus/Minus Query 517244 GTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACT 517303 || || || || || |||||||| |||||||| || || ||||| | ||| |||||||| Sbjct 134609 GTAGACTTGTCTGCAGCAGTCACGTTAAGAATTCCGTTTGCATCGATATCGAATGTGACG 134550 Query 517304 TCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGA 517363 ||||||||||| | || | |||| |||||||| || | | || ||||| ||| Sbjct 134549 TCAATTTGAGGAATACCGCGTGGAGCCGGTGGGATTCCAGTGAGTTCGAAAGTTCCAAGA 134490 Query 517364 TTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTT 517423 | ||| ||| ||| | | ||||| |||||| ||| ||| || | ||| ||| | Sbjct 134489 CAGTGATTGTCTCGAGTCATTGCACGTTCTCCCTCGTAAACTTGAATGGAAACGCCAGGT 134430 Query 517424 TGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTA 517483 || || || | || || || || |||| | ||||| ||||| | Sbjct 134429 TGGTTGTCGGCGTATGTGGTGAACGTCTTGGAAGCCCTGGTTGGAATGTGCGTGTTGCGT 134370 Query 517484 TCAATAATATTGGTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACA 517543 || || | ||| |||||||| || || || || |||| |||||| || |||| || Sbjct 134369 TCTATCAGATTAGTCATAATTCCGCCGGCCGTCTCTATGCCAAGACTGAGCGGAGCCACG 134310 Query 517544 TCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGA--CCAACAAGAATAGCTGCTT 517601 || || || | || | || | |||| ||| ||||| ||| ||||| ||| |||| Sbjct 134309 TCGACGAGCAGAACGTCTTTGATATTTTGATC--TTTGATTCCAGAAAGAACAGCGGCTT 134252 Query 517602 GAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTAC 517661 ||| || |||||| ||||||| | ||| || ||||| | | ||| |||| || | Sbjct 134251 GAACTGCGGCACCAAATGCAACCGATTCGTCCGGATTGATCGAGCAATTGAGTTCCTTGC 134192 Query 517662 CATTGAAAAAAT--TTGAAAGAAGTTGTCTTAC-CTTAGGAATACGAGATGATCCTCCAA 517718 | |||||||| | |||| | | | ||| | ||| || | |||| |||||||||| Sbjct 134191 CGTTGAAAAAGTCCTTGA--GCATCT-TCTGAATCTTCGGCACCCGAGTCGATCCTCCAA 134135 Query 517719 CTAATACAATTTCATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAA 517778 | | ||| | ||| | | | |||||| || || |||| ||| | | ||||||| | Sbjct 134134 CGAGTACCACTTCGTCTATTTTTGATTTGTCAAGCTTTGCATCACGAAGAGCTTTTTCGA 134075 Query 517779 CGGGTTCAAGACCCGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAA 517838 | ||||||||| | | || | || || || || || ||||| || | ||| | Sbjct 134074 CTGGTTCAAGAGTCTTGCGGAAGAGATCGGAGCAGAGCTCCTCGAAGCGGGCACGAGTGA 134015 Query 517839 -----GAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTG 517893 ||||| || ||||| | ||||||| | | |||| ||||| || | | || Sbjct 134014 TCTTTGAGTG-CA----AATCAGTAGCTTCGAAAAGACAATCCACTTCGATTTTGGCTTC 133960 Query 517894 AGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGC 517953 | ||| || || | | ||| |||||||| ||||| || | || | |||| ||| Sbjct 133959 TGACGAGCTTGAAAGAGTCCTTTTGGCACGTTCGCATGCAGTTCGAAGACGCCGTATGGC 133900 Query 517954 TTTTGCTGATTGATTCAAATCTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGT 518013 || ||||| || |||| | || | ||| ||| || || || | || Sbjct 133899 ACGTG--GATTGGTTGAAATGTCCTTACCAGTTTTCCTTTTAAACTCGTTCATAAAGTGC 133842 Query 518014 TACA--AGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTT 518071 | || | ||| | ||||| || || ||||| | | ||| | ||| | ||| | ||| Sbjct 133841 TGCAACATACGTTGGTCAAAGTCCTCGCCTCCGAGGTGAGTGTCTCCAGCCGTCGATCTC 133782 Query 518072 ACTTGGAAAAG---TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCC 518128 |||| ||| || ||| || | | || | | | |||||| || ||||||||| Sbjct 133781 ACTTCGAAGAGGGATCCTTCAGCGATGGAGAGGATGGAAACATCAAAAGTGCCACCACCC 133722 Query 518129 ATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTT--TTTATCAAGACCATACGCAA 518186 | ||| || || || ||||| ||||| || || ||| || || || || || | Sbjct 133721 AGATCGAAGATGAGCACATT--TTTCTCATCACTGATTCCTTTGTCGAGTCCGTAAGCGA 133664 Query 518187 AAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTG 518246 ||| ||||| |||||||| || || |||| | | || || || ||||| || | | Sbjct 133663 GAGCTGCAGCTGTTGGTTCGTTGATGATTCGGATGGCGTTGAGTCCGGCAATAGTTGCCG 133604 Query 518247 CATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 ||||||| || || || ||||| ||||| || || || || ||||| || || || | Sbjct 133603 CATCTTTCGTCGCCTGCCTTTGACTGTCGTTGAAGTAGGCCGGCACAGTGATTACAGCGT 133544 Query 518307 C 518307 | Sbjct 133543 C 133543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779888638476802