Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq17187 253 3e-62 seq18150 242 5e-59 seq6264 221 2e-52 seq18001 143 3e-29 >seq17187 Length=48460 Score = 253 bits (280), Expect = 3e-62 Identities = 782/1197 (65%), Gaps = 17/1197 (1%) Strand=Plus/Plus Query 6665 GATTTACCCGAGGCCTTATCTTCAGCACTTACATTCAAAATACCATTTGCATCAACATCG 6724 ||||| || | | ||| ||| ||||| | || || | ||| || |||||||| | |||| Sbjct 46089 GATTTTCCAGTAGACTTGTCTGCAGCAGTCACGTTAAGAATTCCGTTTGCATCGATATCG 46148 Query 6725 AACCTTACATTAATTTGTGGTGTACCCCTCGGTGCGGCTGGAATACCCGTTAAATCAAAT 6784 || | || | |||||| || |||| | ||||| | ||| || || || | || || Sbjct 46149 AATGTGACGTCAATTTGAGGAATACCGCGTGGTGCCGGTGGGATTCCAGTGAGTTCGAAA 46208 Query 6785 GTACCAAGTAAACTGTTATCCG-TCGCCTTCTT--ACGTTCACCTTCATAGACTTTAATT 6841 || ||||| || || || ||| | || |||||| || || || |||| ||| Sbjct 46209 GTTCCAAG---ACGGTGATTGTCTCGAGTCATTGCACGTTCTCCCTCGTAAACTTGAATG 46265 Query 6842 GTCACCGCAGGTTGATTATCTTGTGCCGTTGAGAAGATTTGTTCTTTCTTAGATGGAAT- 6900 | || | ||||| || || || | ||| | | ||| | |||||| Sbjct 46266 GAGACGCCTGGTTGGTTGTCGGCGTATGTGGTGAACGTCTTGGAAGCCTTGGTTGGAATG 46325 Query 6901 CGTCGTATTTCTCGGAATAACCGGGGTCATAATACCACCCATAGTTTCGAGTCCAAGAGA 6960 ||| || || | | || | ||||| || ||||| || |||| ||||||| Sbjct 46326 CGT-GTGTTGCGCTCGATCAGGTTAGTCATCATTCCACCGGCTGTCTCGATTCCAAGACT 46384 Query 6961 CAGAGGTGTCACGTCCAAGAGTAACAGGTCTTGAACAGATTCGTTCCCTTCAC-CCGTTA 7019 || || | |||||| | ||| | | ||||| | || || | |||| || || | Sbjct 46385 GAGCGGAGCCACGTCGACGAGCAGAACGTCTTTGATAGTTTGAT--CCTTGACTCCAGAA 46442 Query 7020 AGATG-GCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTA 7078 ||| |||||||| || | || || |||| ||||| ||||| || || |||| Sbjct 46443 AGAACAGCGGCTTGCACGGCGGCACCAAATGCAACCGCTTCATCCGGATTGATCGAGCAG 46502 Query 7079 TTCAGTTCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTC 7138 || ||||| || ||||| ||| | ||| | || | || || ||||| | || ||| Sbjct 46503 TTGAGTTCCTTGCCGTTGAAAAAGTCCTTGAGCAGCTTCTGGATCTTCGGCACCCGAGTC 46562 Query 7139 GATCCACCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGT 7198 ||||| || || | || | ||| | | ||| ||||| || | ||||| || ||||| Sbjct 46563 GATCCTCCAACGAGCACCACTTCGTCTATTTTTGATTTGTCAAGCTTTGCATCACGAAGA 46622 Query 7199 GTTTTTTCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGT 7258 | |||||| || ||||| | | || ||||| | || || || || || ||||| Sbjct 46623 GCTTTTTCAACTGGTTCAAGAGTCTTGCGGAAGAGATCGGAGCAGAGCTCTTCGAAACGG 46682 Query 7259 GCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTT 7318 ||||| || || || | ||||||| || ||| | | ||||| | ||| || || Sbjct 46683 GCACGAGTGATCTTTGAGTGAAAATCAATACCTTCGAAAAGAGAATCCACTTCGATTGTG 46742 Query 7319 GTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGA 7378 | || || || || | |||| || || || || || || ||||| | ||| || Sbjct 46743 GCTTCTGACGAGCTTGAAAGAGTTCTTTTGGCACGTTCGCATGCAGTTCGCAGACGTCGT 46802 Query 7379 AGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTC-TTCAGAGAA 7437 | |||||| || || ||||| ||||| | ||| | ||| ||||| |||| | || Sbjct 46803 ATGGCACGTGGATTGGGTGAAATCTCTTTGCCAGTTTTTCTTTTGAACTCGTTCATA-AA 46861 Query 7438 GTGTCGAAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGC 7497 ||| | | | | || || || || || || | || || || || || |||| Sbjct 46862 GTGCTGCAACATACGTTGGTCAAAGTCCTCGCCTCCGAGATGAGTGTCACCAGCCGTCGA 46921 Query 7498 TTTGACTTCAAAGATACCTCCTTCAATGTTTAACAAC---GAAACATCAAACGTACCACC 7554 | | |||||||| || ||||||| | | | | ||||||||||| || ||||| Sbjct 46922 TCTCACTTCAAAAATGGATCCTTCAGCGATCGAGAGGATGGAAACATCAAAAGTGCCACC 46981 Query 7555 ACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGC 7614 |||||| || || ||||| || || | || || || || ||||| ||||| || Sbjct 46982 ACCCAGATCGAAGATGAGCACATTTTTCTCATCACTGATGCCTTTGTCGAGTCCGTAAGC 47041 Query 7615 GATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGC 7674 || ||| || || |||||||| || || || || | ||| || || |||||||| || Sbjct 47042 GAGAGCTGCAGCTGTTGGTTCGTTGATGATTCGGATGGCGTTGAGTCCGGCAATAGTGGC 47101 Query 7675 CGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGC 7734 ||||||||||||||| || | || ||||| ||||| ||||| || || | || || Sbjct 47102 CGCATCTTTCGTCGCCTGCCTCTGACTGTCGTTGAAGTATGCCGGCACAGTGATTACAGC 47161 Query 7735 GTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCAT 7794 ||| |||| | | |||||||||| || || | || ||||| || || ||||| Sbjct 47162 GTCTCTGACAGTGTGTCCGAGATACGTCTCAGCAGTCTCCTTCATCTTCTGCAGCACCAT 47221 Query 7795 CGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAAT 7851 | || ||||| || | |||||||| |||| | || | || |||||||| Sbjct 47222 GGCCGAGATCTCCTCCGGATTGAACTGTTTGCGTTCAGCCTTCAGTTCCACTTCAAT 47278 >seq18150 Length=702657 Score = 242 bits (268), Expect = 5e-59 Identities = 559/834 (67%), Gaps = 11/834 (1%) Strand=Plus/Minus Query 7025 GCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGT 7084 |||||||| || | || || |||| |||| || || || || |||| ||| ||| Sbjct 134258 GCGGCTTGAACTGCGGCACCAAATGCAACCGATTCGTCCGGATTGATCGAGCAATTGAGT 134199 Query 7085 TCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCA 7144 || || ||||| ||| | ||| | ||| | ||||| ||||| | || |||||||| Sbjct 134198 TCCTTGCCGTTGAAAAAGTCCTTGAGCATCTTCTGAATCTTCGGCACCCGAGTCGATCCT 134139 Query 7145 CCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTT 7204 || || | || | ||| | | ||| ||||| || | ||||| || ||||| | |||| Sbjct 134138 CCAACGAGTACCACTTCGTCTATTTTTGATTTGTCAAGCTTTGCATCACGAAGAGCTTTT 134079 Query 7205 TCGACAGGTTCCATACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGG 7264 ||||| ||||| | | || ||||| | || || || ||||| || || ||||| Sbjct 134078 TCGACTGGTTCAAGAGTCTTGCGGAAGAGATCGGAGCAGAGCTCCTCGAAGCGGGCACGA 134019 Query 7265 GTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGT 7324 || || || | |||||| | ||| | | |||| | ||| || | | || | Sbjct 134018 GTGATCTTTGAGTGCAAATCAGTAGCTTCGAAAAGACAATCCACTTCGATTTTGGCTTCT 133959 Query 7325 GCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCA 7384 | || || | || | || || || || || || ||||| | ||| || | |||| Sbjct 133958 GACGAGCTTGAAAGAGTCCTTTTGGCACGTTCGCATGCAGTTCGAAGACGCCGTATGGCA 133899 Query 7385 CGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTC-TTCAGAGAAGTGTCG 7443 || || || ||||| || || | ||| | ||||||||| |||| | ||||| | Sbjct 133898 CGTGGATTGGTTGAAATGTCCTTACCAGTTTTCCTTTTAAACTCGTTCATA-AAGTGCTG 133840 Query 7444 AAGGAGTCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGAC 7503 | | | || || || || || || | ||| || || || || |||| | | || Sbjct 133839 CAACATACGTTGGTCAAAGTCCTCGCCTCCGAGGTGAGTGTCTCCAGCCGTCGATCTCAC 133780 Query 7504 TTCAAAGATACCTCCTTCA---ATGTTTAACAACGAAACATCAAACGTACCACCACCCAG 7560 ||| |||| ||||||| ||| | | ||||||||||| || ||||||||||| Sbjct 133779 TTCGAAGAGGGATCCTTCAGCGATGGAGAGGATGGAAACATCAAAAGTGCCACCACCCAG 133720 Query 7561 GTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG-TTC--TTATCGAGACCGTACGCGAT 7617 || || ||||| || || | || || || || ||| || ||||| ||||| |||| Sbjct 133719 ATCGAAGATGAGCACATT--TTTC-TCATCACTGATTCCTTTGTCGAGTCCGTAAGCGAG 133663 Query 7618 AGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGC 7677 ||| || || |||||||| || || || || | ||| || || |||||||||||||| Sbjct 133662 AGCTGCAGCTGTTGGTTCGTTGATGATTCGGATGGCGTTGAGTCCGGCAATAGTTGCCGC 133603 Query 7678 ATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTC 7737 |||||||||||| || | ||| ||||| ||||||||||| || || | || ||||| Sbjct 133602 ATCTTTCGTCGCCTGCCTTTGACTGTCGTTGAAGTAGGCCGGCACAGTGATTACAGCGTC 133543 Query 7738 CGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGA 7797 |||| | | |||||||||| || || | || ||||| || || ||||| | Sbjct 133542 TCTGACAGTGTGTCCGAGATACGTCTCAGCAGTCTCCTTCATCTTCTGCAGCACCATGGC 133483 Query 7798 TGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAAT 7851 || ||||| || | |||||||| |||| | || | || |||||||| Sbjct 133482 CGAGATCTCCTCCGGATTGAACTGTTTGCGTTCAGCCTTCAGTTCCACTTCAAT 133429 >seq6264 Length=118469 Score = 221 bits (244), Expect = 2e-52 Identities = 396/573 (69%), Gaps = 8/573 (1%) Strand=Plus/Minus Query 7241 CACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAAC 7300 || || ||||| ||||| || | ||| ||| || ||||| || | || ||| | | Sbjct 7790 CAAAGCTCCTCGAAACGGGCTCTGGTGATGTTGGTGTAGAAGTCGATTCCCTCGAAGAGA 7731 Query 7301 GAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACAC 7360 || || || || || | | || | | ||||| | |||| |||||||||||| || Sbjct 7730 GAGTCGATCTCGATCGAAGCCTGGGAAGAGGAAGAAAGAGTTCTCTTTGCGCGCTCGCAA 7671 Query 7361 GCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGT 7420 || || || | ||| || || ||||| ||||| || || ||| ||||| || || || Sbjct 7670 GCGGTACGCAGACGGCGGAGAGCACGTGGGTTGGAGGCAAGATCCTTCTTGTGCTTGCGC 7611 Query 7421 TTAAACTCTTCAGAGAAGTG-TCGA--AGGAGTCTCGAATCGAAATCTTCACCACCCAAG 7477 || ||||| | ||||||| | || | | | | ||||||||| || || || | Sbjct 7610 TTGAACTCGGCGCAGAAGTGGTTGACCATGCGGTT---ATCGAAATCCTCTCCTCCGAGA 7554 Query 7478 TGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAA 7537 || || || || || || | ||||| || ||||| || | |||||| | | | || Sbjct 7553 TGGGTGTCTCCAGCAGTAGACTTGACCTCGAAGATTCCGTCCTCAATGGTGAGAATGGAC 7494 Query 7538 ACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTT-CGTATCGTCGTCTTTGTT 7596 ||||| ||||||||||| || || || || ||||| ||||| ||| || | | | || Sbjct 7493 ACATCGAACGTACCACCTCCAAGATCGAAGATGAGAACGTTGCGT-TCTCCATGTCCCTT 7435 Query 7597 CTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTT 7656 ||| || || ||||| ||||| || || || ||||| || || || |||||||| ||| Sbjct 7434 CTTGTCAAGTCCGTAAGCGATGGCGGCGGCGGTTGGCTCGTTGATGATACGAAGGACGTT 7375 Query 7657 CAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGC 7716 || ||||| |||| | | || || || || || || || || || ||||| ||||| || Sbjct 7374 GAGTCCAGCGATAGCTCCGGCGTCCTTGGTGGCCTGACGCTGGGAGTCGTTGAAGTAAGC 7315 Query 7717 CGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTT 7776 || || || ||||| || ||| | || | ||||| | | || ||| | || || Sbjct 7314 TGGAACGGTGACGACGGCATCCTTAACGGAGGTTCCGAGGAAAGCCTCAGCGGTCTCCTT 7255 Query 7777 CATTTTGGTAAGAACCATCGATGAAATCTCTTC 7809 ||| ||| |||||||||||| || |||||||| Sbjct 7254 CATCTTGAGAAGAACCATCGAGGAGATCTCTTC 7222 Score = 89.7 bits (98), Expect = 7e-13 Identities = 131/185 (71%), Gaps = 3/185 (2%) Strand=Plus/Minus Query 7958 AAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGT 8017 ||||||||||| | ||||||||||| ||| || || || || || ||||| |||||| Sbjct 6877 AAAACTGTGTTGTGTGGGTTCATGGCAACTTGATTTTTGGCGGCATCTCCGATGAGACGT 6818 Query 8018 TCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTTCGCA 8077 || | | || || || ||||| ||||| || || || || || || || ||||| || Sbjct 6817 TC---AGTGTCGGTGAAGGCGACATACGACGGTGTGGTGCGGTTTCCCTGATCGTTGGCG 6761 Query 8078 ATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGTTGTTCCTAAATCA 8137 || || || || ||| | || |||||||| || || || ||||| |||||| Sbjct 6760 ATGATCTCGACCTTTCCGTGCATGAACACTCCGACGCAGGAGTATGTCGTTCCCAAATCA 6701 Query 8138 ATACC 8142 || || Sbjct 6700 ATTCC 6696 >seq18001 Length=114689 Score = 143 bits (158), Expect = 3e-29 Identities = 222/317 (70%), Gaps = 0/317 (0%) Strand=Plus/Plus Query 7535 GAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTG 7594 ||||||||||| || ||||||||||| || || ||||| || || | || || || Sbjct 104386 GAAACATCAAAAGTGCCACCACCCAGATCGAAGATGAGCACATTTTTCTCATCACTGATG 104445 Query 7595 TTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAG 7654 || ||||| ||||| |||| ||| || || |||||||| || || || || | | Sbjct 104446 CCTTTGTCGAGTCCGTAAGCGAGAGCTGCAGCTGTTGGTTCGTTGATGATTCGGATGGCG 104505 Query 7655 TTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAG 7714 || || || |||||||| ||||||||||||||||| || | || ||||| |||||| Sbjct 104506 TTGAGTCCGGCAATAGTGGCCGCATCTTTCGTCGCCTGCCTCTGACTGTCGTTGAAGTAG 104565 Query 7715 GCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTCCGCGATATCT 7774 || || || || | || ||||| |||| | | |||||||||| || || | || Sbjct 104566 GCAGGCACAGTGATTACAGCGTCTCTGACAGTGTGTCCGAGATACGTCTCAGCAGTCTCC 104625 Query 7775 TTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCG 7834 ||||| || || ||||| | || ||||| || | |||||||| |||| | Sbjct 104626 TTCATCTTCTGCAGCACCATGGCCGAGATCTCCTCCGGATTGAACTGTTTGCGTTCAGCC 104685 Query 7835 TTAAAATCAACTTCAAT 7851 || | || |||||||| Sbjct 104686 TTCAGTTCCACTTCAAT 104702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 634983408826280