Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq18085 114 2e-20 >seq18085 Length=168442 Score = 114 bits (126), Expect = 2e-20 Identities = 299/455 (66%), Gaps = 6/455 (1%) Strand=Plus/Plus Query 109398 CGCCTTCGAGCGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATG 109457 || ||||| ||| | ||| ||||| ||||| ||||| || ||||||| |||| | || Sbjct 27191 CGGCTTCGTGCGCAAATAGTACATTCCCGTCTTGAGTCCCTTCTTCCATCCGTAAAAGTG 27250 Query 109458 CATTGAAGAGAGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTG 109517 ||| || | || ||| | || | ||||| | ||||| |||||| || || Sbjct 27251 CATCGAGGTGATGGTGGCGTAGCTAGGCTTGGCCATATGAATGTTCAACGACTGCGATTG 27310 Query 109518 ATCGATGAATCGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCA 109577 ||| ||| | ||||| || |||||||| ||||| || |||||| ||| ||||| Sbjct 27311 ATCAATGTAGGCTCCACGGTCCGCCGCCATCTCGATAATCTCCTTTTGTGGAATCTCCCA 27370 Query 109578 GACAGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCC 109637 ||||| ||||| | || || ||| ||||| || | |||| || || || || Sbjct 27371 CACAGTGCGGTACAGCTCCTGGAGATCGGTCGGAATTCCCTCAATGTCTTTGATGGATCC 27430 Query 109638 ACCAGCCTTCACCATGAGA---TCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAG 109694 || | || ||| | ||||||||| | ||| | || || | Sbjct 27431 GTTG---TTGGCAATCAGACGGTTCTTCATCTCATCGTTCCACAATCCACGCTCCACCAA 27487 Query 109695 ATCGTCAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTA 109754 || | | | || |||||| | || ||||| | || || || ||| Sbjct 27488 GTCCTTGAGCATGTGTGGGTTGACAATCTGGAAGTCACCGGAGAGCACACGACGAGAGTA 27547 Query 109755 GATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGC 109814 |||||| | ||||| || |||| |||||||||| || || || || ||||||||||| Sbjct 27548 GATGTTTGAGGTGTACGGCTCGATCGACTCATTGTTTCCGAGTATCTGGGCAGTGGAAGC 27607 Query 109815 TGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGA 109849 || ||||| |||||||||||||||||||| |||| Sbjct 27608 CGTCGGCATTGGAGCCATGAGAAGACTGTTGCGGA 27642 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588837465482600