Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq17868 181 2e-40 >seq17868 Length=20976 Score = 181 bits (200), Expect = 2e-40 Identities = 174/223 (78%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | ||| | |||||| ||||| || |||||||||||||| |||| | || Sbjct 6653 TCTGAGGCGGAGAACCAAGTGAAGTGTGGATTCCTTTTGAATATTGTAGTCGGACAATGT 6594 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | |||||||| |||||||| || || ||||| |||| ||| |||||||| || || || Sbjct 6593 GCGTCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGTCTTTGCTGGTCTGGTGGGATTCC 6534 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||||||||||||| || ||||||||||| ||||| || ||| ||||| | Sbjct 6533 TTCCTTGTCTTGAATTTTTGCTTTCACGTTCTCAATTGTGTCGGAGGCTTCGACTTCCAA 6474 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || | ||||||||| |||||||| || ||||| | |||||| Sbjct 6473 TGTGATCGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCATT 6431 Score = 172 bits (190), Expect = 1e-37 Identities = 164/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 ||||||||||||||||| |||||||| || ||||| |||| || || | ||||| ||| Sbjct 8331 ACAAGGTGAAGAGTGGATTCTTTTTGGATGTTGTAGTCGGAGAGGGTACGGCCATCCTCG 8272 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| | || || || ||||| ||||| || || |||||||| Sbjct 8271 AGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGG 8212 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| || |||||||| || ||| || |||||||| | || ||| Sbjct 8211 ATCTTGGCCTTGACGTTTTCGATGGTGTCGGATGCTTCGACCTCAAGGGTGATAGTTTTT 8152 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 || || ||||| || ||||| | ||||||| Sbjct 8151 CCAGTTAAAGTCTTGACGAAGATTTGCATT 8122 Score = 167 bits (184), Expect = 5e-36 Identities = 170/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | |||||||| ||||| ||||| || || || || ||||||| || || Sbjct 6197 TCTGAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTATAATCGGAGAGGGT 6138 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | ||||| ||||||||||| || |||||||| |||| ||| || ||||||||||| || Sbjct 6137 GCGACCATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGATCTGGAGGAATTCC 6078 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||| || || || ||| || || || |||||||| || || || || || Sbjct 6077 TTCCTTGTCCTGGATCTTGGCCTTAACATTTTCGATGGTGTCGGAGGCCTCAACCTCGAG 6018 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| | ||| ||||| ||||||||||| ||||| | |||||| Sbjct 6017 GGTGATCGTTTTTCCGGTCAAAGTTTTGACGAAAATTTGCAT 5976 Score = 147 bits (162), Expect = 5e-30 Identities = 159/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| || || || || ||||| |||||||| ||||| || | || || | |||||||| Sbjct 7097 AACGAGATGGAGTGTCGACTCCTTTTGAATGTTGTAGTCCGACAGGGTGCGACCATCTTC 7038 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | ||||| || |||||||| |||| |||||||||||| || || || ||||||||||| Sbjct 7037 CAATTGCTTTCCGGCGAAGATCAGTCTTTGTTGGTCTGGTGGGATTCCCTCTTTGTCTTG 6978 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||| ||||| || || || ||||| || || || ||||| || | ||||| Sbjct 6977 GATTTTGGCTTTGACATTTTCGATAGTGTCGGAGGCCTCGACCTCAAGCGTGATGGTCTT 6918 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| |||||||| || || || | ||||||| Sbjct 6917 TCCGGTCAAAGTCTTGACAAAGATTTGCATT 6887 Score = 145 bits (160), Expect = 2e-29 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 ||| |||| | || ||||| || || ||||| || || || ||||| |||| || || Sbjct 6425 TCTAAGTCGGAGCACGAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCGGAGAGCGT 6366 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || || ||||||||||| || ||||||||||| || || || ||||| ||||| || Sbjct 6365 GCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGATCTGGTGGAATTCC 6306 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||||||||| || || || |||||| || ||||||||||| || || || || || Sbjct 6305 TTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAGGCCTCAACCTCGAG 6246 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| | ||||||||||| | || || ||||| | |||||| Sbjct 6245 GGTGATGGTCTTTCCTGTGAGGGTCTTCACGAAGATCTGCATT 6203 Score = 129 bits (142), Expect = 1e-24 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||||||||| || || ||||| || || || ||||| || | || || | ||||| || Sbjct 7829 AACAAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGGCCATCCTC 7770 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||||| || || ||||| ||||||| || |||||||| || || || || |||||||| Sbjct 7769 AAGCTGTTTTCCGGCGAAAATAAGTCTCTGCTGGTCTGGCGGGATACCCTCCTTGTCTTG 7710 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||| || || || || ||||| || ||| ||||||||||| | ||||| Sbjct 7709 GATCTTGGCCTTCACATTTTCGATTGTGTCGGAGGCTTCGACTTCAAGGGTGATGGTCTT 7650 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| || | || || ||||| | |||||| Sbjct 7649 TCCGGTGAGGGTCTTCACGAAGATCTGCATT 7619 Score = 102 bits (112), Expect = 2e-16 Identities = 109/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 |||||| || || || |||| || |||||||| || || || |||||||||||||| || Sbjct 7991 CTTACCGGCAAAAATGAGTCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCTTGAATCTT 7932 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| |||||||||||||| || || || |||||||| | |||||||| || Sbjct 7931 GGCCTTGACATTCTCAATGGTGTCGGATGCCTCAACCTCAAGGGTGATGGTCTTTCCGGT 7872 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | ||||| Sbjct 7871 GAGGGTCTTGACGAAGATCTGCAT 7848 Score = 95.1 bits (104), Expect = 3e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 194999 TACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTT 195058 |||| || |||||||||| || || ||||| || || || || ||||||||||| || Sbjct 7257 TACCGGCAAAGATAAGTCTCTGCTGATCTGGCGGGATTCCCTCCTTGTCTTGAATCTTGG 7198 Query 195059 GCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCA 195118 ||||| ||||||||||||||||| || ||||| || || | || ||||| || | Sbjct 7197 CTTTGACATTCTCAATGGTGTCCGATGCCTCAACTTCGAGAGTGATGGTTTTTCCAGTGA 7138 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 ||| || ||||| | ||||| Sbjct 7137 GAGTCTTGACGAAGATCTGCAT 7116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109214111960639