Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq17868 120 2e-22 >seq17868 Length=20976 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34753 TTCCTCCCCTCAACCTCAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCG 34812 ||||||| || | | | ||||||||||| |||| ||| || ||||| || ||||| | Sbjct 6660 TTCCTCCTCTGAGGCGGAGAACCAAGTGAAGTGTGGATTCCTTTTGAATATTGTAGTCGG 6601 Query 34813 AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCG 34872 | | | ||| |||| |||||||| ||||||||||| || |||| |||||||||| | | Sbjct 6600 ACAATGTGCGTCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGTCTTTGCTGGTCTGGTG 6541 Query 34873 GCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAA 34932 | | || |||||||| ||| || ||| ||| | || | || ||| || | Sbjct 6540 GGATTCCTTCCTTGTCTTGAATTTTTGCTTTCACGTTCTCAATTGTGTCGGAGGCTTCGA 6481 Query 34933 CATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || | || || || ||||| || | |||||| || ||||||||||| Sbjct 6480 CTTCCAATGTGATCGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCAT 6432 Score = 114 bits (126), Expect = 8e-21 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 |||||||| |||||||||||||| ||| | || |||| || ||||| |||||||| || Sbjct 6850 TCTTTCTGGATGTTATAGTCCGAGAGGGTGCGACCATCCTCAAGCTGCTTTCCGGCGAAG 6791 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| ||||||||| | || | || |||||||| ||||| |||||| | Sbjct 6790 ATCAGTCTCTGCTGGTCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTT 6731 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || |||||||| || | || || || ||||| ||||| |||||||| Sbjct 6730 TCGATAGTGTCTGATGCCTCAACTTCCAAAGTGATAGTCTTTCCAGTGAGGGTCTTCACG 6671 Query 34971 AAGATCTGCAT 34981 || || ||||| Sbjct 6670 AAAATTTGCAT 6660 Score = 114 bits (126), Expect = 8e-21 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | || |||| || |||||||||||||| || Sbjct 7810 TCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGGCCATCCTCAAGCTGTTTTCCGGCGAAA 7751 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| ||||||||| |||| | ||||||||||| ||||| || || | Sbjct 7750 ATAAGTCTCTGCTGGTCTGGCGGGATACCCTCCTTGTCTTGGATCTTGGCCTTCACATTT 7691 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || ||| || || || | ||| ||||| ||||| ||||| |||||||| Sbjct 7690 TCGATTGTGTCGGAGGCTTCGACTTCAAGGGTGATGGTCTTTCCGGTGAGGGTCTTCACG 7631 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 7630 AAGATCTGCAT 7620 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | || | || || ||||| || ||||| || Sbjct 6394 TCCTTCTGGATGTTGTAGTCGGAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 6335 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || || ||||| ||| | || | || || ||||| ||||| ||||| | Sbjct 6334 ATAAGGCGCTGCTGATCTGGTGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTT 6275 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || ||||||||| |||| ||| ||||| ||||| ||||| |||||||| Sbjct 6274 TCAATGGTGTCGGAGGCCTCAACCTCGAGGGTGATGGTCTTTCCTGTGAGGGTCTTCACG 6215 Query 34971 AAGATCTGCAT 34981 ||||||||||| Sbjct 6214 AAGATCTGCAT 6204 Score = 100 bits (110), Expect = 2e-16 Identities = 109/143 (76%), Gaps = 4/143 (3%) Strand=Plus/Minus Query 34842 CCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGT 34901 |||||||| || |||| ||||| ||| |||| | ||||||||||| |||||| | Sbjct 7255 CCGGCAAAGATAAGTCTCTGCTGATCTGGCGGGATTCCCTCCTTGTCTTGAATCTTGGCT 7196 Query 34902 TTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGA 34959 ||||| || || || | || |||||||| |||| || ||||||||||| |||| Sbjct 7195 TTGAC--ATTCTCAATGGTGTCCGATGCCTCAACTTCGAGAGTGATGGTTTTTCCAGTGA 7138 Query 34960 GAGTCTTCACAAAGATCTGCATA 34982 ||||||| || |||||||||||| Sbjct 7137 GAGTCTTGACGAAGATCTGCATA 7115 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| || || | || | || || |||||||||||||| || Sbjct 7582 TCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCGTCCTCGAGCTGTTTTCCGGCGAAG 7523 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || |||| |||||| ||| | || | || |||||||| ||||| ||||| | Sbjct 7522 ATCAGTCTTTGCTGATCTGGTGGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTT 7463 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || ||| || || || | || ||||| ||||| || | |||||||||| Sbjct 7462 TCGATGGTGTCGGAGGCTTCGACCTCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTCACA 7403 Query 34971 AAGATCTGCAT 34981 || || ||||| Sbjct 7402 AAAATTTGCAT 7392 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 34778 GTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTG 34837 ||||| ||| |||||| || ||||| ||||| || ||| | || |||| || ||||| Sbjct 8326 GTGAAGAGTGGATTCTTTTTGGATGTTGTAGTCGGAGAGGGTACGGCCATCCTCGAGCTG 8267 Query 34838 TTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT 34897 ||||| || || || | || ||||| ||| | || | ||||||||||| ||||| Sbjct 8266 CTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCTTGGATCTT 8207 Query 34898 CTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGT 34957 |||||| | | || | || || || || || | ||| || |||||||| || Sbjct 8206 GGCCTTGACGTTTTCGATGGTGTCGGATGCTTCGACCTCAAGGGTGATAGTTTTTCCAGT 8147 Query 34958 GAGAGTCTTCACAAAGATCTGCAT 34981 | |||||| || ||||| ||||| Sbjct 8146 TAAAGTCTTGACGAAGATTTGCAT 8123 Score = 82.4 bits (90), Expect = 5e-11 Identities = 107/146 (73%), Gaps = 4/146 (3%) Strand=Plus/Minus Query 34839 TTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTC 34898 || |||||||| || |||| ||||||||| | || | ||||| ||||| |||||| Sbjct 7990 TTACCGGCAAAAATGAGTCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCTTGAATCTTG 7931 Query 34899 TGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCG 34956 ||||| || || || | || |||||||| || | ||| ||||| ||||| | Sbjct 7930 GCCTTGAC--ATTCTCAATGGTGTCGGATGCCTCAACCTCAAGGGTGATGGTCTTTCCGG 7873 Query 34957 TGAGAGTCTTCACAAAGATCTGCATA 34982 |||| ||||| || |||||||||||| Sbjct 7872 TGAGGGTCTTGACGAAGATCTGCATA 7847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324559151066376