Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq17187 187 2e-41 seq18150 174 1e-37 seq18088 107 2e-17 seq17868 105 5e-17 >seq17187 Length=48460 Score = 187 bits (206), Expect = 2e-41 Identities = 473/708 (67%), Gaps = 10/708 (1%) Strand=Plus/Minus Query 551901 CGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCAT-CTGGTACTCAAAC 551959 || ||||| ||||||| |||||| | |||||| || |||||||| || || | || | Sbjct 46801 CGACGTCTGCGAACTGCATGCGAACGTGCCAAAAGAACTCTTTCAAGCTCGT-CAGAAGC 46743 Query 551960 CACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGC 552019 ||| || ||||| ||||| | || || || ||||||| | | | || | | || Sbjct 46742 CACAATCGAAGTGGATTCTCTTTTCGAAGGTATTGATTTTCACTCAAAGATCACTCGTGC 46683 Query 552020 CAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGT 552079 | || ||||| | || || |||||||| | || || |||||||||| ||| ||| Sbjct 46682 CCGTTTCGAAGAGCTCTGCTCCGATCTCTTCCGCAAGACTCTTGAACCAGTTGAAAAAGC 46623 Query 552080 TTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATC 552139 | | | ||| ||||| |||| ||||| ||| || | ||| | ||||| ||||| ||||| Sbjct 46622 TCTTCGTGATGCAAAGCTTGACAAATCAAAAATAGACGAAGTGGTGCTCGTTGGAGGATC 46563 Query 552140 TACAAGAATTCCTAAAATTCGCGAAATGTT-AAGTTCTTATTTCAATGGTAAAAAATTAA 552198 || | | || || || | | || | ||| ||| |||||| || || || | | Sbjct 46562 GACTCGGGTGCCGAAGATCCAGAAGCTGCTCAAGGACTT-TTTCAACGGCAAGGAACTCA 46504 Query 552199 A-TGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATT 552257 | || | | ||||| ||||| || ||||| | ||||||||| | ||||| ||| || Sbjct 46503 ACTGCTCGA-TCAATCCGGATGAAGCGGTTGCATTTGGTGCCGCCGTGCAAGCCGCTGTT 46445 Query 552258 CTTTCTGGACAAACTGATGAAAAACTA-CAAA-ATATTGTACTTGTAGATGTTACTCCTC 552315 ||||||||| | ||| |||||| |||| | || | || || || || |||| | Sbjct 46444 CTTTCTGGAGTCAAGGAT--CAAACTATCAAAGACGTTCTGCTCGTCGACGTGGCTCCGC 46387 Query 552316 TATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTA 552375 | |||||| | || |||| || || || |||||||| || ||||| | || || Sbjct 46386 TCAGTCTTGGAATCGAGACAGCCGGTGGAATGATGACTAACCTGATCGAGCGCAACACAC 46327 Query 552376 CTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTA 552435 ||||| || || || | || || | || || ||| | | || Sbjct 46326 GCATTCCAACCAAGGCTTCCAAGACGTTCACCACATACGCCGACAACCAACCAGGCGTCT 46267 Query 552436 CAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTT 552495 | |||||| ||| || |||||| | | | ||| ||| ||| | | ||||| |||| Sbjct 46266 CCATTCAAGTTTACGAGGGAGAACGTGCAATGACTCGAGACAATCACCGTCTTGGAACTT 46207 Query 552496 TTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCG 552555 | | | || || || || || || || || | || |||||||| || || |||| Sbjct 46206 TCGAACTCACTGGAATCCCACCGGCACCACGCGGTATTCCTCAAATTGACGTCACATTCG 46147 Query 552556 ATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATCTA 552603 |||||||||| || |||||| | || ||||||||| || || |||| Sbjct 46146 ATATCGATGCAAACGGAATTCTTAACGTGACTGCTGCAGACAAGTCTA 46099 >seq18150 Length=702657 Score = 174 bits (192), Expect = 1e-37 Identities = 467/707 (66%), Gaps = 8/707 (1%) Strand=Plus/Plus Query 551901 CGTCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCAT-CTGGTACTCAAAC 551959 || ||||| ||||||| |||||| | |||||| | |||||||| || || | || | Sbjct 133906 CGGCGTCTTCGAACTGCATGCGAACGTGCCAAAAGGACTCTTTCAAGCTCGT-CAGAAGC 133964 Query 551960 CACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGC 552019 || || ||||| |||| | || || | | ||||| | | || | | || Sbjct 133965 CAAAATCGAAGTGGATTGTCTTTTCGAAGCTACTGATTTGCACTCAAAGATCACTCGTGC 134024 Query 552020 CAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGT 552079 | || || || | || || |||||||| | || || |||||||||| ||| ||| Sbjct 134025 CCGCTTCGAGGAGCTCTGCTCCGATCTCTTCCGCAAGACTCTTGAACCAGTCGAAAAAGC 134084 Query 552080 TTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATC 552139 | | | ||| ||||| |||| ||||| ||| || | ||| | || || ||||| ||||| Sbjct 134085 TCTTCGTGATGCAAAGCTTGACAAATCAAAAATAGACGAAGTGGTACTCGTTGGAGGATC 134144 Query 552140 TACAAGAATTCCTAAAATTCGCGAAATGTT-AAGTTCTTATTTCAATGGTAAAAAATTAA 552198 || | | || || |||| | ||| | ||| ||| |||||| || || || | | Sbjct 134145 GACTCGGGTGCCGAAGATTCAGAAGATGCTCAAGGACTT-TTTCAACGGCAAGGAACTCA 134203 Query 552199 ATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTC 552258 || | ||||| || || | ||||| | |||||||||| ||||||| ||| ||| Sbjct 134204 ATTGCTCGATCAATCCGGACGAATCGGTTGCATTTGGTGCCGCAGTTCAAGCCGCTGTTC 134263 Query 552259 TTTCTGGA--CAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCT 552316 |||||||| |||| ||| |||| | || | || | || || || || |||| || Sbjct 134264 TTTCTGGAATCAAA--GATCAAAATATCAAAGACGTTCTGCTCGTCGACGTGGCTCCGCT 134321 Query 552317 ATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTAC 552376 |||||| |||| || | || || |||||||||||||| || || | || || Sbjct 134322 CAGTCTTGGCATAGAGACGGCCGGCGGAATTATGACTAATCTGATAGAACGCAACACGCA 134381 Query 552377 TATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTAC 552436 ||||| | || || | || || | || || ||| ||| ||| | Sbjct 134382 CATTCCAACCAGGGCTTCCAAGACGTTCACCACATACGCCGACAACCAACCTGGCGTTTC 134441 Query 552437 AATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTT 552496 |||||| ||| || |||||| | | | ||| ||| ||| | ||||| ||||| Sbjct 134442 CATTCAAGTTTACGAGGGAGAACGTGCAATGACTCGAGACAATCACTGTCTTGGAACTTT 134501 Query 552497 TAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGA 552556 | | || || || || ||||| || || | || |||||||| || || ||||| Sbjct 134502 CGAACTCACTGGAATCCCACCGGCTCCACGCGGTATTCCTCAAATTGACGTCACATTCGA 134561 Query 552557 TATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAAATCTA 552603 ||||||||| || |||||| | || ||||||||| || || |||| Sbjct 134562 TATCGATGCAAACGGAATTCTTAACGTGACTGCTGCAGACAAGTCTA 134608 >seq18088 Length=658288 Score = 107 bits (118), Expect = 2e-17 Identities = 155/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 550322 CCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCC-AGTGCTTTTGT 550380 |||||| | |||| |||||||| | | || ||||| | | ||| ||| | | | | Sbjct 385054 CCAGAAGAGGTTTCCGCTATGGTTCTCGTCAAGATGAAGGAGATTGCCGAGT-CGTATCT 385112 Query 550381 TGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACG 550440 ||| | ||||| | | | || || | ||||| ||||| ||||| || || | ||||| Sbjct 385113 TGGAAAGGAAGTCAAGAACGCTGTCGTCACTGTGCCAGCCTATTTCAACGATGCTCAACG 385172 Query 550441 TCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGA 550500 ||| ||||| || || |||||| || |||||| | || ||| |||||||||||||||| Sbjct 385173 TCAGGCTACCAAGGACGCTGGAACCATCGCTGGATTGAACGTTGTTCGTATTATCAATGA 385232 Query 550501 ACCTACTGCTGCTGCACTTGCATATGGACTTGATAA 550536 || || || || || | || || |||||||| || Sbjct 385233 GCCAACCGCCGCCGCCATCGCCTACGGACTTGACAA 385268 >seq17868 Length=20976 Score = 105 bits (116), Expect = 5e-17 Identities = 120/161 (75%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 563254 CTGAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||||| ||||| || | ||||| || ||| || ||||||||| || | | || Sbjct 6652 CTGAGGCGGAGAACCAAGTGAAGTGTGGATTCCTTTTGAATATTGTAGTCGGACAATGTG 6593 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | | |||||| || || ||||||||||| || ||||||||||| || || || |||||| Sbjct 6592 CGTCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGTCTTTGCTGGTCTGGTGGGATTCCT 6533 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATC 563414 || || |||||||||||| ||| || ||||||||| || Sbjct 6532 TCCTTGTCTTGAATTTTTGCTTTCACGTTCTCAATTGTGTC 6492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4028300872175330