Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_018874.1 Length=211518 Score E Sequences producing significant alignments: (Bits) Value seq18162 102 1e-16 >seq18162 Length=623243 Score = 102 bits (112), Expect = 1e-16 Identities = 184/263 (70%), Gaps = 6/263 (2%) Strand=Plus/Minus Query 197023 AGATCCTCGTCGCTAAAGCCCGTACCGATCTTACAAATGGATTCGTACATCTG--GTTGT 197080 ||||| || ||| | || || || || || || || | | |||||| ||| ||||| Sbjct 157517 AGATCTTCATCGGTGAATCCTGTGCCAATTTTGCAGACGCTTTCGTAT-TCTTCAGTTGT 157459 Query 197081 CGGGATTGTAACAGGCGAGTAAGAAAGCG-CCGTAGGTTCCCGTTCTCTTTCCCACCCCG 197139 || |||||| ||| | || |||| | | |||||| || || | ||||| || || Sbjct 157458 TGG-ATTGTAGCAGCCAAG-AAGATATCCACCGTAGACACCAGTCCGTTTTCCAACTCCC 157401 Query 197140 TTGAAGCCTCCGATAACCACCAGATCCAGAGTGTCGCACACCCCTTCCATGTAATCTTTC 197199 | | | || || ||||||||||||| ||||| | || || |||| ||| |||||| Sbjct 157400 GAGTACGCACCCATCACCACCAGATCCAATGTGTCTCCAACTCCATCCACGTAGTCTTTC 157341 Query 197200 TTCAGTTTGAGCCAGCTTCTAGATCTCTTGGCAATCTCGTAGGTTGCGTTTACGTCCAGG 197259 |||| ||| ||||| || ||||| ||| ||| ||||| || || | |||||| Sbjct 157340 TTCATTTTCAGCCAACTATGCGATCTTCTGGAAATTTCGTACGTCGCCTCCGTGTCCAGC 157281 Query 197260 GTCTTGATCATCAATCCCTCGCA 197282 || || ||||||||||| || || Sbjct 157280 GTTTTTATCATCAATCCTTCACA 157258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 676570424738960