Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_019407.1 Length=218929 Score E Sequences producing significant alignments: (Bits) Value seq3 116 5e-21 >seq3 Length=60809 Score = 116 bits (128), Expect = 5e-21 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 147445 TTCAGGACCTTCAGCCAGGAGGCGACGTAGGAGGCGTGGTCTTCGCGGACTTCCGGGGTC 147504 || |||| ||| | |||| ||| | ||| ||||||||| ||||| || | ||| Sbjct 57347 TTGAGGATCTTGATCCAGCTGGCCAGGTACTTGGCGTGGTCAGCGCGGGGCTCGGCGGTG 57406 Query 147505 AGGCCGAGGATGGCGCAGAGGAAGGCCGAGCCCAGTTCGGCGACCAGTTCCTCGGCGGCG 147564 | || || ||||| ||||||| || | |||||| ||||| |||||||| ||||| ||| Sbjct 57407 ACACCCAGCTTGGCGGAGAGGAATGCTGCGCCCAGCTCGGCAACCAGTTCTTCGGCTGCG 57466 Query 147565 TAGGCCTCGTCACCGAAGCGCTTGCCGAACTCGCGGTTCAGGCG 147608 ||||| | || |||||||||||||| || ||||| | |||||| Sbjct 57467 TAGGCGGCATCGCCGAAGCGCTTGCCAAATTCGCGCTGCAGGCG 57510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 700280046627480