Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_019410.1 Length=221828 Score E Sequences producing significant alignments: (Bits) Value seq3 118 2e-21 >seq3 Length=60809 Score = 118 bits (130), Expect = 2e-21 Identities = 160/219 (73%), Gaps = 12/219 (5%) Strand=Plus/Plus Query 149220 GCGGCGGTGAAGATGAAGCGCTTG---TCGCCCTTCAGGACCTTCAGCCAGGAGGCGACA 149276 |||||||||| || | || |||| || | || |||| ||| | |||| ||| | Sbjct 57317 GCGGCGGTGATGA--ACGC-CTTGCGGTCATCTTTGAGGATCTTGATCCAGCTGGCCAGG 57373 Query 149277 TAGGAGGCGTGGTCTTCGCGGACTTCCGGGGTCAGGCCGAGGATGGCGCAGAGGAAGGCC 149336 || ||||||||| ||||| || | ||| | || || ||||| ||||||| || Sbjct 57374 TACTTGGCGTGGTCAGCGCGGGGCTCGGCGGTGACACCCAGCTTGGCGGAGAGGAATGCT 57433 Query 149337 GAGCCCAGTTCGGCGACCAGTTCCTCGGCGGCGTAGGCCTCGTCACCGAAGCGCTTGCCG 149396 | |||||| ||||| |||||||| ||||| |||||||| | || |||||||||||||| Sbjct 57434 GCGCCCAGCTCGGCAACCAGTTCTTCGGCTGCGTAGGCGGCATCGCCGAAGCGCTTGCCA 57493 Query 149397 AACTCGCGGTTCAGGCGGTCCTCGCGACCGGTCCAGTGG 149435 || ||||| | |||||| || || ||||||||||| Sbjct 57494 AATTCGCGCTGCAGGCG-----CG-GAGCGGTCCAGTGG 57526 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709554664608160