Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_019411.1 Length=219216 Score E Sequences producing significant alignments: (Bits) Value seq3 113 6e-20 >seq3 Length=60809 Score = 113 bits (124), Expect = 6e-20 Identities = 145/197 (74%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 147993 GCGGCGGTGAAGATGAAGCGCTTG---TCGCCCTTCAGGACCTTCAGCCAGGAGGCGACA 148049 |||||||||| || | || |||| || | || |||| ||| | |||| ||| | Sbjct 57317 GCGGCGGTGATGA--ACGC-CTTGCGGTCATCTTTGAGGATCTTGATCCAGCTGGCCAGG 57373 Query 148050 TAGGAGGCGTGGTCTTCGCGGACTTCCGGGGTCAGGCCGAGGATGGCGCAGAGGAAGGCC 148109 || ||||||||| ||||| || | ||| | || || ||||| ||||||| || Sbjct 57374 TACTTGGCGTGGTCAGCGCGGGGCTCGGCGGTGACACCCAGCTTGGCGGAGAGGAATGCT 57433 Query 148110 GAGCCCAGTTCGGCGACCAGTTCCTCGGCGGCGTAGGCCTCGTCACCGAAGCGCTTGCCG 148169 | |||||| ||||| |||||||| ||||| |||||||| | || |||||||||||||| Sbjct 57434 GCGCCCAGCTCGGCAACCAGTTCTTCGGCTGCGTAGGCGGCATCGCCGAAGCGCTTGCCA 57493 Query 148170 AACTCGCGGTTCAGGCG 148186 || ||||| | |||||| Sbjct 57494 AATTCGCGCTGCAGGCG 57510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 701198230608320