Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq17418 125 1e-23 seq18085 123 5e-23 >seq17418 Length=39954 Score = 125 bits (138), Expect = 1e-23 Identities = 224/327 (69%), Gaps = 0/327 (0%) Strand=Plus/Plus Query 48187 GAGACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAA 48246 ||| || ||||||| ||| | || ||| ||||| ||||| | |||||||| ||| || Sbjct 754 GAGCCCTGGCATGAGCCCACGCTTTTTAAGCCAAAAAATGGAGGCGAAAGATCCACTAAA 813 Query 48247 GAAGATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTC 48306 ||||| || || || || ||||||||| | || ||||| | || || || |||||||| Sbjct 814 AAAGATTCCTTCGACAGCAGCGAACGCGATAAGTCTCTCGGCAAATGACGCTTTCTTGTC 873 Query 48307 TGAGATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 || ||||| || |||||||| ||||||||||||||| | | | || || Sbjct 874 CGAAATCCAACGGAGAGCCCAGTCGGCCTTCTTCTTGATGAACTCAAACTCGAAAATTGC 933 Query 48367 CCGGAAGAGCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTA 48426 | || | | | ||| | |||| || || || || ||||| | ||| Sbjct 934 GTTAAGCAGTGTGTGACGCTCTGTTTCGTCTCGAATGTACGTCTCGATGAGCTTCGAGTA 993 Query 48427 CATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAA 48486 ||| || ||||| | |||||| || ||||| ||||| || |||||| | |||||| | Sbjct 994 CATTTCCGAGTGAATATTCTCGATGGCGATTTGGAATCCATAGAAGAATCGGGCCTCTGA 1053 Query 48487 CACCTGCACTTCTGTGGAGAATCTCTC 48513 || | |||||| | ||||| | ||| Sbjct 1054 TACTTTCACTTCGTTCGAGAAGCGCTC 1080 >seq18085 Length=168442 Score = 123 bits (136), Expect = 5e-23 Identities = 145/196 (74%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 212858 CATGTCCTCGTTCCAGAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTAT 212917 ||| || |||||||| | || | | ||| | ||||| || ||| |||||||| || Sbjct 27455 CATCTCATCGTTCCACAATCCACGCTCCACCAAGTCCTTGAGCATGTGTGGGTTGACAAT 27514 Query 212918 CTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCT 212977 |||||||||||| |||||||| | | ||| | |||||| ||||| |||||||| Sbjct 27515 CTGGAAGTCACCGGAGAGCACACGACGAGAGTAGATGTTTGAGGTGTACGGCTCGATCGA 27574 Query 212978 CTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATGGGAGCCACCAGGAGACT 213037 ||| ||||| || || ||||| |||||| || || ||||| ||||||| || ||||| Sbjct 27575 CTCATTGTTTCCGAGTATCTGGGCAGTGGAAGCCGTCGGCATTGGAGCCATGAGAAGACT 27634 Query 213038 GTTCCTCACTCCGTGC 213053 ||| | | ||||||| Sbjct 27635 GTTGCGGATTCCGTGC 27650 Score = 122 bits (134), Expect = 2e-22 Identities = 382/591 (65%), Gaps = 3/591 (1%) Strand=Plus/Plus Query 213821 CATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCAC 213880 |||||||| || || ||||| || || ||||| || | | | | ||| || Sbjct 29928 CATGAACAAATCTGGCACCCAGAGTGCCAGAAACAGATCACGAGCACGCTCCTCTTCGGG 29987 Query 213881 TCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTA 213940 ||||| ||||||||| || | ||| || || || || |||||||||||||||| ||| Sbjct 29988 TCCAGTGTTTTTGCGGAGTGAAACAAACTCGAAAATATCGGCGTGCCACGGCTCCAGGTA 30047 Query 213941 GATGGCAAAGGCGCCCG---GCCTCTTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTT 213997 |||||| || || |||| || | ||||| ||||| || || | || |||| Sbjct 30048 GATGGCGAACGCTCCCGGGCGCTTGTTGCCACCCTGATCGACGTAACGAGCAGTGTTGTT 30107 Query 213998 GAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGA 214057 | ||| ||| || | || | ||| ||||| ||| ||||||||| || || || ||| Sbjct 30108 GTAGACGCGAAGCATCGGAATCAGTCCGTTCGACGTTCCGTTGGTGCCAGCAATCACCGA 30167 Query 214058 GCCGGAGGCCCTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCAT 214117 |||| ||| | | ||| || | ||| || || ||||| ||| ||| || || | Sbjct 30168 TCCGGTGGCACGAATCTTGTGCACGTTGAGACCGATTCCACCTGCGCTCTTCGATATAAG 30227 Query 214118 GGCGCAGCGCCTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAA 214177 |||||| | | | || || ||| || || |||||| | | | |||| Sbjct 30228 GGCGCATTGTTTTAGCGTGTCATAGATTCCCAGAATCGAGTCATCACTCATCGTGAGCAG 30287 Query 214178 GAAGCAGCTCGAGAGCTGGGGCCTGGACGAGCCAGAGTTGAAAAGCGTGGGGCTGGCATG 214237 |||||| ||| | || |||| | | | |||||||||||||| || || ||| || Sbjct 30288 GAAGCACGACGACATTTGTGGCCGGCATGTTCCAGAGTTGAAAAGAGTTGGAGAGGCGTG 30347 Query 214238 GATCATAAACTTGTTAGAGAGGAGCCTGTAGGTCTCCAGGACTGAGGGGATGTCGTGCTT 214297 |||| ||| | || | | |||| || || | | |||| | ||| || | Sbjct 30348 CGTCATGAACCGTTCCGACATCAAATTGTACGTTTCGATGGCTGAAGCGATATCTTCTCC 30407 Query 214298 GTGGATCTGTAGAGCGCACCTCATCAGCATGTGCTGGGGCCTCTCTATGGGTCCTTTGGG 214357 ||| || | ||| | ||||| ||| ||||| || | || | | ||| Sbjct 30408 GTGTATTCCGATGGCGACACGCATCAACATCTGCTGAGGACGTTCGACAATCTCCTTGTT 30467 Query 214358 GCCCTTGAGCAGGTAGGAGCGCTCCAGAGTCTTGAACCCAAAGTAGGAGTA 214408 |||||| |||||||| ||||| || || ||||| || ||| ||| ||| Sbjct 30468 TATCTTGAGAAGGTAGGAACGCTCAAGCGTTTTGAAGCCGAAGAAGGTGTA 30518 Score = 114 bits (126), Expect = 2e-20 Identities = 314/478 (66%), Gaps = 5/478 (1%) Strand=Plus/Plus Query 213171 GAGTAGGGGCCATGCTCCTTGGCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATG 213230 ||||| || ||| |||| |||| |||||| || || || || | |||||| Sbjct 28891 GAGTATGGTCCAAGCTCTGCAGCCAACTCGCAACTGGCAGTGAGAGCCGCATGGTAGATC 28950 Query 213231 GTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCATG 213290 ||||| || | |||| || | |||||| ||| || ||||| || |||| Sbjct 28951 ACCTCAAAGATGCGCTTGTTAAGATCTCTGGCCTGTGGCGAGGTGAACGGATAGCGCATG 29010 Query 213291 CGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTA 213350 | ||| ||| || || ||||| || |||| || || || | || | || ||| Sbjct 29011 AGCATGAAGCAATCGGCGAGACCCTGAACGCCGAGTCCAATCGGGCGATGACGCATGTTC 29070 Query 213351 GACTTG-GAGCACTCCTCCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCG 213409 || ||| |||| |||||| | || || |||| ||||||||||||||| |||||||| Sbjct 29071 GAGTTGCGAGC-CTCCTCGACCGGATAGTAGTTCACGTCGATGATCTTGTTCAGGTTGCG 29129 Query 213410 GGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTG 213469 ||| |||||| || || | ||| || | | | | ||| | | ||| Sbjct 29130 AGTGATCACTTTTGTCACTTCGGCGAGCTTCACAAAGTCAAACTTCTT---CTCGTGGGT 29186 Query 213470 CACAAACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTCCTGAGAGTCTGT 213529 |||||| || || || ||| || ||||| || || | ||| | | | | Sbjct 29187 GACAAACCGGTTCAACGCAATAGAGGCAAGATTGCAGACAGCGATCTCATCCGGAGCAGA 29246 Query 213530 GTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTT 213589 |||||| |||||||||||||||| || |||| |||||| || |||||||| ||||| Sbjct 29247 GTACTCTATGATCTCGGTGCACAAATTCGAGCATTTGATGGTTCCAAGGTTCTGCTGGTT 29306 Query 213590 TGACTTTGCGTTGGCAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGG 213647 ||| ||| ||| | | || |||||| |||||||| |||||||| | |||| Sbjct 29307 TGATTTTCTGTTAGAGGCGTCTTTGTAGGTTATGTAGGGAAGTCCGGTCTCAATCTGG 29364 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931313691841280