Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq18085 125 1e-23 >seq18085 Length=168442 Score = 125 bits (138), Expect = 1e-23 Identities = 427/659 (65%), Gaps = 10/659 (2%) Strand=Plus/Plus Query 221975 TCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCCAGTGCTTGTTGTCTTTGACC 222034 || || || ||||| ||| | || ||||||| | ||| | || | | || ||| Sbjct 29863 TCATCAAGCCCTGGGCACTCGCACGGGCACATCAAAGACCAATCCTGATCCTTTTCGACA 29922 Query 222035 CTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCC 222094 | | |||||| | || || | ||| || ||| |||| ||||| | | |||| ||| Sbjct 29923 CGTTTCATGAACAAATCTGGCACCCAGAGTGCCAGAAACAGATCACGAGCACGCTCCTCT 29982 Query 222095 TCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAAAATGTCAGCGTGCCACGGCTCC 222154 || || ||||||| | || | |||||| ||||| || ||||||||||||||| Sbjct 29983 TCGGGTCCAGTGTTTTTGCGGAGTGAAACAAACTCGAAAATATCGGCGTGCCACGGCTCC 30042 Query 222155 AGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACCCTGATCCACCATCCTCTCCAGA 222214 || |||| ||| | || || || |||||||||||||||||||| | | | ||| Sbjct 30043 AGGTAGATGGCGAACGCTCCCGGGCGCTTGTTGCCACCCTGATCGA-CGTAACGAGCAGT 30101 Query 222215 G-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGGATCGACCGTTGGTGCCCTTAAT 222273 | |||| ||| |||||| |||| | ||||||||| || ||||||||||| ||| Sbjct 30102 GTTGTTGTAGACGCGAAGCATCGGAATCAGTCCGTTCGACGTTCCGTTGGTGCCAGCAAT 30161 Query 222274 GTACGCACCGCCGGCCCTCAGGT--TACTGGCAGACATGCCGATACCACCGGCGTGTTTC 222331 || ||| ||| | | | | | | || | ||||| ||||| ||| ||| Sbjct 30162 CACCGATCCGGTGGCACGAATCTTGTGCACGTTGAGA--CCGATTCCACCTGCGCTCTTC 30219 Query 222332 GAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATGCCCTCCATAGAGTCCTCCTTGACG 222391 || || | |||||| || || ||||| ||| ||| || ||||| || | | Sbjct 30220 GATATAAGGGCGCATTGTTTTAGCGTGTCATAGATTCCCAGAATCGAGTCATCACTCATC 30279 Query 222392 TTCAGCAGAAAACAAGACGACATCTGAGATTTGGTGGAACAGGCGTTAAACAGCGTGGGA 222451 | ||||| || || |||||||| || | | | | | ||| || || || ||| Sbjct 30280 GTGAGCAGGAAGCACGACGACATTTGTGGCCGGCATGTTCCAGAGTTGAAAAGAGTTGGA 30339 Query 222452 CTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCGTACGTCTCTACGACTCTGGCGATG 222511 |||||| || | | | | ||||||| || |||||| || | | || ||||| Sbjct 30340 GAGGCGTGCGTCATGAACCGTTCCGACATCAAATTGTACGTTTCGATGGCTGAAGCGATA 30399 Query 222512 TTGTCCCCGTGAATCTGCATGGCGCATCTCATGTACATGTACTGGGGCCTCTCCACAGGA 222571 | || ||||| || |||||| | ||| |||| | ||| || | || ||| Sbjct 30400 TCTTCTCCGTGTATTCCGATGGCGACACGCATCAACATCTGCTGAGGACGTTCGACAATC 30459 Query 222572 CCCTTG--GAGCTGGAGAGCAGGTACGATTTTTCCAGAGTCTTGAACCCAAAGTAGTTG 222628 ||||| | || |||| ||||| || || || || ||||| || ||| || || Sbjct 30460 TCCTTGTTTATCTTGAGA--AGGTAGGAACGCTCAAGCGTTTTGAAGCCGAAGAAGGTG 30516 Score = 87.8 bits (96), Expect = 3e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 221065 CATCTCGTCCGTCCATAGACCCCTCTCTTCCAGCACCTTGACCATGTGCTTGTTCACCAC 221124 |||||| || |||| | || | ||| ||| |||||| |||||| ||| || | Sbjct 27455 CATCTCATCGTTCCACAATCCACGCTCCACCAAGTCCTTGAGCATGTGTGGGTTGACAAT 27514 Query 221125 TTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGGTTCGATGCT 221184 ||||| || || |||||||| | | ||| | ||| || ||| |||| ||||| Sbjct 27515 CTGGAAGTCACCGGAGAGCACACGACGAGAGTAGATGTTTGAGGTGTACGGCTCGATCGA 27574 Query 221185 CTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCACCAGCAGACT 221244 ||| ||||| || || ||||| || ||| || || ||||| || |||| || ||||| Sbjct 27575 CTCATTGTTTCCGAGTATCTGGGCAGTGGAAGCCGTCGGCATTGGAGCCATGAGAAGACT 27634 Query 221245 GTTGCGCAGTCCG 221257 |||||| | |||| Sbjct 27635 GTTGCGGATTCCG 27647 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928626324092480