Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq17187 161 6e-34 seq17868 114 8e-20 seq18169 96.9 2e-14 >seq17187 Length=48460 Score = 161 bits (178), Expect = 6e-34 Identities = 470/712 (66%), Gaps = 14/712 (2%) Strand=Plus/Minus Query 475482 TAAGACGTCTTAGAACTGCTTGTGAACGTGCTAAGCGAGCTCTTTCTTCTGCTACTCAAA 475541 || ||||||| ||||||| || |||||||| || || ||||||| ||| ||| | Sbjct 46803 TACGACGTCTGCGAACTGCATGCGAACGTGCCAAAAGAACTCTTTCAA--GCTCGTCAGA 46746 Query 475542 --CTACTGTTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAG 475599 | || | ||||| ||||||||||| ||||| ||||||| | | | || || | Sbjct 46745 AGCCACAATCGAAGTGGATTCTCTTTTCGAAGGTATTGATTTTCACTCAAAGATCACTCG 46686 Query 475600 GGCTAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACA 475659 || || ||||| | || || |||||||| | || || ||||||| |||||| | Sbjct 46685 TGCCCGTTTCGAAGAGCTCTGCTCCGATCTCTTCCGCAAGACTCTTGAACCAGTTGAAAA 46626 Query 475660 AGTTCTCAGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGG 475719 || ||| | ||| | || |||||||||||| || | | ||| | || || || ||||| Sbjct 46625 AGCTCTTCGTGATGCAAAGCTTGACAAATCAAAAATAGACGAAGTGGTGCTCGTTGGAGG 46566 Query 475720 TTCAACAAGAATTCCAAAAAT-AAGAGAAATGCTTTCATCATATTTTAATGGTAA-AAAG 475777 || || | | || || || ||| | |||| | ||| || || || || Sbjct 46565 ATCGACTCGGGTGCCGAAGATCCAGA-AGCTGCTCAAGGACTTTTTCAACGGCAAGGAAC 46507 Query 475778 TTAAATGAAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCT 475837 | || || | | ||||| |||||||| ||||||| ||| || || || ||||| ||| Sbjct 46506 TCAACTGCTCG-ATCAATCCGGATGAAGCGGTTGCATTTGGTGCCGCCGTGCAAGCCGCT 46448 Query 475838 ATTTTATCAGGTCAATCAGACGA-GAAACTA--AATAATATTGTACTTGTTGACGTAACT 475894 || | || || | ||| | || |||||| || | || | || || ||||| || Sbjct 46447 GTTCTTTCTGG--AGTCA-AGGATCAAACTATCAAAGACGTTCTGCTCGTCGACGTGGCT 46391 Query 475895 CCACTTTCATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAAT 475954 || || | || | || |||| || || || |||||||| || || || | || Sbjct 46390 CCGCTCAGTCTTGGAATCGAGACAGCCGGTGGAATGATGACTAACCTGATCGAGCGCAAC 46331 Query 475955 ACTCCTATCCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACT 476014 || | || ||| ||| || || || |||| || | || || ||| || Sbjct 46330 ACACGCATTCCAACCAAGGCTTCCAAGACGTTCACCACATACGCCGACAACCAACCAGGC 46271 Query 476015 GTAACCATCCAAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGA 476074 || |||| ||| | | || || ||| | | | ||| ||| ||| || |||||| Sbjct 46270 GTCTCCATTCAAGTTTACGAGGGAGAACGTGCAATGACTCGAGACAATCACCGTCTTGGA 46211 Query 476075 ACTTTTAATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACT 476134 ||||| | || || || || || || || | || ||||||||||||| || || Sbjct 46210 ACTTTCGAACTCACTGGAATCCCACCGGCACCACGCGGTATTCCTCAAATTGACGTCACA 46151 Query 476135 TTTGATATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATAAATCTA 476186 || ||||| |||||||| || |||||||| || |||||| || || |||| Sbjct 46150 TTCGATATCGATGCAAACGGAATTCTTAACGTGACTGCTGCAGACAAGTCTA 46099 >seq17868 Length=20976 Score = 114 bits (126), Expect = 8e-20 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| ||||| ||||| || |||||| | || || || | || || Sbjct 8344 ACGAAGACGGAGCACAAGGTGAAGAGTGGATTCTTTTTGGATGTTGTAGTCGGAGAGGGT 8285 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| || || ||||||||||| || || | ||| || ||||| || |||||||| Sbjct 8284 ACGGCCATCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATTCC 8225 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 ||||||||||| ||||| ||||| ||| || || || | || | | |||| Sbjct 8224 CTCCTTGTCTTGGATCTTGGCCTTGACGTTTTCGATGGTGTCGGATGCTTCGA-CCTCAA 8166 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| |||||||| || || | |||||| ||||| ||||| Sbjct 8165 GGGTGATAGTTTTTCCAGTTAAAGTCTTGACGAAGATTTG 8126 Score = 100 bits (110), Expect = 2e-15 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || |||||||| |||||||| || || ||||| | ||||| || | || || Sbjct 6880 CGGAGACGGAGCACAAGATGGAGAGTTGACTCTTTCTGGATGTTATAGTCCGAGAGGGTG 6821 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | ||| ||||| |||||||| || || || || | || || || || || |||||| Sbjct 6820 CGACCATCCTCAAGCTGCTTTCCGGCGAAGATCAGTCTCTGCTGGTCTGGTGGGATTCCT 6761 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730 |||||||| || ||||| ||||| ||| ||||| || | || | || || ||| Sbjct 6760 TCCTTGTCCTGGATCTTGGCCTTGACGTTTTCGATAGTGTCTGATGCCTCAACTTCCAA- 6702 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| || || ||||| ||||| ||||||||||| Sbjct 6701 AGTGATAGTCTTTCCAGTGAGGGTCTTCACGAAAATTTG 6663 Score = 95.1 bits (104), Expect = 8e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 480555 AGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTTCTG 480614 |||||||| ||||| || || || || || | |||||||| | || || | Sbjct 6193 AGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTATAATCGGAGAGGGTGCGA 6134 Query 480615 TTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCC 480674 ||| || || |||||||| || || || || | ||| ||||| ||||||||||||||| Sbjct 6133 CCATCCTCGAGCTGCTTTCCGGCGAAGATGAGTCTTTGCTGATCTGGAGGAATTCCTTCC 6074 Query 480675 TTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAGGGTA 480734 ||||| || ||||| || ||| ||| || || || | | | || ||||| Sbjct 6073 TTGTCCTGGATCTTGGCCTTAACATTTTCGATGGTGTCGGAGGCCTCAACCTCGAGGGTG 6014 Query 480735 ATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 || ||||| ||||| | ||| || ||||||||||| Sbjct 6013 ATCGTTTTTCCGGTCAAAGTTTTGACGAAAATTTG 5979 Score = 93.3 bits (102), Expect = 3e-13 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| ||||| || ||||| || || | || || |||| || || Sbjct 7841 ACGGAGACGGAGAACAAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGCGT 7782 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| ||||| || ||||| || |||||||| | || || || || || || || Sbjct 7781 GCGGCCATCCTCAAGCTGTTTTCCGGCGAAAATAAGTCTCTGCTGGTCTGGCGGGATACC 7722 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||||||||| ||||| || ||| ||| || || || | | | |||||| Sbjct 7721 CTCCTTGTCTTGGATCTTGGCCTTCACATTTTCGATTGTGTCGGAGGCTTCGACTTCAAG 7662 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || |||||||| ||||| ||||| || || Sbjct 7661 GGTGATGGTCTTTCCGGTGAGGGTCTTCACGAAGATCTG 7623 Score = 89.7 bits (98), Expect = 3e-12 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 480633 CCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGT 480692 || ||||| ||||| | || ||||| || || ||||| ||||||||||||||||| | Sbjct 7255 CCGGCAAAGATAAGTCTCTGCTGATCTGGCGGGATTCCCTCCTTGTCTTGAATCTTGGCT 7196 Query 480693 TTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAG 480751 |||||| ||||| || || | || | || ||| || || || ||||| || ||||| Sbjct 7195 TTGACATTCTCAATGGTGTCCGATGCCTCAA-CTTCGAGAGTGATGGTTTTTCCAGTGAG 7137 Query 480752 AGTCTTAACGAAAATTTG 480769 |||||| ||||| || || Sbjct 7136 AGTCTTGACGAAGATCTG 7119 >seq18169 Length=175875 Score = 96.9 bits (106), Expect = 2e-14 Identities = 218/325 (67%), Gaps = 22/325 (7%) Strand=Plus/Minus Query 297322 GTTTTAGATTGTTGGTTTGAATCAGGTTCTATGCCTTATGGTCAAATTCATTATCCTTTT 297381 ||||| || || ||||| || || || || ||||| || | ||||| ||| ||||| ||| Sbjct 22265 GTTTTCGACTGCTGGTTCGAGTCCGGATCCATGCCGTACGCTCAAAATCACTATCCGTTT 22206 Query 297382 GAAAATTCCGAAATTTTAGAC----ACTTCACAAGATTATATTGCAGATTTTATAACAGA 297437 || ||| | || |||| || ||||| | ||| || ||||| | || Sbjct 22205 GAGAATCGCAAAGTTTTCGAGGACAACTTCCC----------TGCGGACTTTATCGCTGA 22156 Query 297438 ATCAATTGATCAAACAAGAGGTTGGTTTTATACTTTATTAGTTCTTTCTACAGCTATATT 297497 | ||| ||||| || | || ||||| || ||| | | || | || || ||| | || Sbjct 22155 AGGAATCGATCAGACCCGTGGCTGGTTCTACACTCTTCTCGTCTTGTCGACTGCTCTTTT 22096 Query 297498 TAACAAACCAGCATTTAAAAATGTAAT-TGTTACAGGAATTGTTAACGCAGCTGATGGAC 297556 |||| |||| |||| |||||| | || ||| || ||| | ||| ||| | || ||| Sbjct 22095 CAACAGACCACCATTCAAAAATCTCATCTGTAAC-GGACTCGTTCTCGCTTCAGACGGAG 22037 Query 297557 AAAAAATGTCAAAAAGTAAAGGTAATTATCCTGATCCAA---ATATTTTGATGGATAAAT 297613 ||||||||||| || || || ||||| ||||| | | ||| ||| |||| | Sbjct 22036 CTAAAATGTCAAAGAGAAAGAAGAACTATCCAGATCCGATGGAAATTGTGA---ATAAGT 21980 Query 297614 ATGGTGCAGATACTTTACGTCTTTA 297638 | || || ||| || | ||||| || Sbjct 21979 ACGGAGCCGATGCTCTCCGTCTCTA 21955 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267372047569916