Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq17815 102 1e-16 >seq17815 Length=64061 Score = 102 bits (112), Expect = 1e-16 Identities = 127/172 (74%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 13541 TCCAAAATTACCGGTATTCCCAAGTTGGATGACGCGAACAAGGCGGGTACGGCACAATCT 13600 |||||| | | || ||||| ||| |||| ||||| ||| | || || || | || || Sbjct 23589 TCCAAACTGAAGGGAATTCCGAAGCTGGAGGACGCCAACGACGCTGGAACT--AAAAACT 23532 Query 13601 GGAA--AGTGTACTCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGG 13658 | | |||| || ||||| |||| ||||| |||||||| || || || ||||| | | Sbjct 23531 CGCAGCAGTGCACGCTCATCCTCACTGAGGGAGATTCGGCCAAGACACTGGCGGTATCTG 23472 Query 13659 GTCTCTCTGTCGTTGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAA 13710 |||| |||| || |||||||| | ||||| |||||||||||||| || || Sbjct 23471 GTCTGGCTGTGGTCGGTCGTGACAAGTACGGAGTGTTCCCACTTCGTGGAAA 23420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596429279372960