Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Caenorhabditis_20japonica_20[genbank_20GCA_5F000147155.1_202010-09- 24] 18,817 sequences; 166,256,191 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq17868 96.9 6e-15 >seq17868 Length=20976 Score = 96.9 bits (106), Expect = 6e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || ||||| | ||| || || || || | ||| | ||| || || || |||||| Sbjct 6433 ATTCCTCCTCTAAGTCGGAGCACGAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCG 6374 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | ||| | || || | || || ||||| || || | | ||| ||||| || Sbjct 6373 GAGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATAAGGCGCTGCTGATCTGGT 6314 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || ||||||||||| || || || |||| || | |||| ||| || ||||| | |||| Sbjct 6313 GGAATTCCTTCTTTGTCCTGGATCTTGGCCTTGACATTTTCAATGGTGTCGGAGGCCTCA 6254 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || || ||||| || || || || || || |||||| Sbjct 6253 ACCTCGAGGGTGATGGTCTTTCCTGTGAGGGTCTTCACGAAGATCTGCATT 6203 Score = 91.5 bits (100), Expect = 3e-13 Identities = 163/238 (68%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 193124 AATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATT 193183 ||||| || || ||||| | || || |||| || | ||| | || || |||||| Sbjct 6668 AATTTGCATTCCTCCTCTGAGGCGGAGAACCAAGTGAAGTGTGGATTCCTTTTGAATATT 6609 Query 193184 ATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTG 193243 |||||||| || || | ||| || | || ||||||||||| || | ||| || || Sbjct 6608 GTAGTCGGACAATGTGCGTCCATCTTCCAGCTGCTTTCCGGCAAAGATCAGTCTTTGCTG 6549 Query 193244 ATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGA 193303 || || || |||||||| || ||||| ||||| | ||| | || ||| || ||||| Sbjct 6548 GTCTGGTGGGATTCCTTCCTTGTCTTGAATTTTTGCTTTCACGTTCTCAATTGTGTCGGA 6489 Query 193304 AGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 | || ||||| | || || || || || || | || || || || || |||||| Sbjct 6488 GGCTTCGACTTCCAATGTGATCGTCTTTCCGGTCAAAGTCTTGACGAAGATCTGCATT 6431 Score = 89.7 bits (98), Expect = 9e-13 Identities = 111/151 (74%), Gaps = 1/151 (1%) Strand=Plus/Minus Query 193211 TAATTGTTTT-CCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTATCTT 193269 ||||| | || ||||||||||| | |||||| || || || || ||||| ||||| |||| Sbjct 7998 TAATTATCTTACCGGCAAAAATGAGTCTCTGCTGGTCTGGTGGGATTCCCTCTTTGTCTT 7939 Query 193270 GTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATAGTTT 193329 | || |||| || | ||| ||| || ||||| | |||||| || || || || || | Sbjct 7938 GAATCTTGGCCTTGACATTCTCAATGGTGTCGGATGCCTCAACCTCAAGGGTGATGGTCT 7879 Query 193330 TACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 | || || || || || || || || ||||| Sbjct 7878 TTCCGGTGAGGGTCTTGACGAAGATCTGCAT 7848 Score = 84.2 bits (92), Expect = 4e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190 || || ||||| | || || || || || | || | ||| || || || |||||| Sbjct 7621 ATTCCTCCTCTGAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCG 7562 Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250 || | || | | || || | ||||||||||| || || | ||| || ||||| || Sbjct 7561 GAGAGAGTGCGACCGTCCTCGAGCTGTTTTCCGGCGAAGATCAGTCTTTGCTGATCTGGT 7502 Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310 || |||||||| || || || || |||| || | |||| || || ||||| | || Sbjct 7501 GGGATTCCTTCCTTGTCCTGGATCTTGGCCTTGACATTTTCGATGGTGTCGGAGGCTTCG 7442 Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || || || || | || || ||||| ||||||||| Sbjct 7441 ACCTCAAGCGTGATGGTCTTTCCGGTCAAAGTCTTCACAAAAATTTGCATT 7391 Score = 84.2 bits (92), Expect = 4e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || || || || | ||| | ||| || || || ||||| || | ||| | | Sbjct 7834 CGGAGAACAAGGTGGAGTGTCGACTCCTTCTGGATGTTGTAGTCAGAGAGCGTGCGGCCA 7775 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | ||||||||||| ||||| | |||||| || || || || || || || || Sbjct 7774 TCCTCAAGCTGTTTTCCGGCGAAAATAAGTCTCTGCTGGTCTGGCGGGATACCCTCCTTG 7715 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 ||||| || |||| || | |||| || || ||||| | || ||||| || || || Sbjct 7714 TCTTGGATCTTGGCCTTCACATTTTCGATTGTGTCGGAGGCTTCGACTTCAAGGGTGATG 7655 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || || || || || |||||| Sbjct 7654 GTCTTTCCGGTGAGGGTCTTCACGAAGATCTGCATT 7619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899442790039440